miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 65689 0.68 0.813336
Target:  5'- aGGacaUCGCGCG-GGCGUgCGAGCUgGUGGa -3'
miRNA:   3'- -CCg--AGCGUGCgCCGCA-GCUUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 66115 0.66 0.870852
Target:  5'- gGGCgacaucaccgaggCGCugGC-GCGcUGGGCCGCGGa -3'
miRNA:   3'- -CCGa------------GCGugCGcCGCaGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 66588 0.66 0.880327
Target:  5'- uGGCcgacUGCACgGCGGCGgcc-ACCGCGGc -3'
miRNA:   3'- -CCGa---GCGUG-CGCCGCagcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 66725 0.68 0.788178
Target:  5'- aGGCUgGCGCcCGuGcCGUCGGACCccgGCGGc -3'
miRNA:   3'- -CCGAgCGUGcGC-C-GCAGCUUGG---CGCU- -5'
15954 3' -59.4 NC_004065.1 + 67598 0.73 0.48988
Target:  5'- cGGCUCGagauaGCGCGGCGUcCGucgcACCGUa- -3'
miRNA:   3'- -CCGAGCg----UGCGCCGCA-GCu---UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 68169 0.68 0.805086
Target:  5'- cGGCggCGCGCGCGacggaGCuGUCGGccccGCCGCu- -3'
miRNA:   3'- -CCGa-GCGUGCGC-----CG-CAGCU----UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 70042 0.67 0.83642
Target:  5'- cGCUCGuCACGguggagaCGGCcaCGAucGCCGCGAu -3'
miRNA:   3'- cCGAGC-GUGC-------GCCGcaGCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 70934 0.66 0.886861
Target:  5'- cGGCUauuuguaauacaCGCcggguCGCGGCgGUCGGuccagAUCGCGAu -3'
miRNA:   3'- -CCGA------------GCGu----GCGCCG-CAGCU-----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 74155 0.72 0.573176
Target:  5'- gGGCcgagaacccCGCAgGCGGCGuUCGAGCCGaUGAc -3'
miRNA:   3'- -CCGa--------GCGUgCGCCGC-AGCUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 77040 0.67 0.850066
Target:  5'- aGCUgGCGCGgauCGGCGaCGAGaacacggccgagauCCGCGAg -3'
miRNA:   3'- cCGAgCGUGC---GCCGCaGCUU--------------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 77842 0.67 0.837192
Target:  5'- aGGCUcCGgACGCGGCGUgGGcuCCcCGGu -3'
miRNA:   3'- -CCGA-GCgUGCGCCGCAgCUu-GGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 77948 0.69 0.724571
Target:  5'- uGGCUguagaugCGgACGCGGuCGUgGAgcGCCGUGAa -3'
miRNA:   3'- -CCGA-------GCgUGCGCC-GCAgCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 78190 0.69 0.752938
Target:  5'- uGCUCGacgaACGCGuacccgucgcGCGUCGAG-CGCGAu -3'
miRNA:   3'- cCGAGCg---UGCGC----------CGCAGCUUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 78346 0.68 0.788178
Target:  5'- gGGCgcCGCGCGCuGGCGguaGAGCuCGCu- -3'
miRNA:   3'- -CCGa-GCGUGCG-CCGCag-CUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 78672 0.67 0.852286
Target:  5'- cGGCcggCGC-CGCGGCGccCGAGa-GCGAg -3'
miRNA:   3'- -CCGa--GCGuGCGCCGCa-GCUUggCGCU- -5'
15954 3' -59.4 NC_004065.1 + 78874 0.71 0.605608
Target:  5'- aGCUCGCGgucgccgacgaucauCGCGGCGUUGccGCCGCc- -3'
miRNA:   3'- cCGAGCGU---------------GCGCCGCAGCu-UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 79622 0.67 0.821442
Target:  5'- cGCUgCGCGCGCGGaCGcugCGGGCgUGCGu -3'
miRNA:   3'- cCGA-GCGUGCGCC-GCa--GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 82306 0.69 0.761908
Target:  5'- gGGCcCGUAgCGCGGCGUccagcucaucCGAGCCgGUGGu -3'
miRNA:   3'- -CCGaGCGU-GCGCCGCA----------GCUUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 83104 0.75 0.412667
Target:  5'- ---gCGCACGCGGCGgaaGAugCGCGGg -3'
miRNA:   3'- ccgaGCGUGCGCCGCag-CUugGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 85178 0.66 0.886861
Target:  5'- cGGCaCGCAgGUGaaccaGUCGAcCCGCGAc -3'
miRNA:   3'- -CCGaGCGUgCGCcg---CAGCUuGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.