miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 86909 0.66 0.873597
Target:  5'- cGGuCUCGCccucggcgGCGCGcGCGUCGAaaacgaagACgGUGGa -3'
miRNA:   3'- -CC-GAGCG--------UGCGC-CGCAGCU--------UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 87632 0.68 0.770776
Target:  5'- uGGCcCGCGCGa-GCG-CGAACUGCGc -3'
miRNA:   3'- -CCGaGCGUGCgcCGCaGCUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 88699 0.68 0.788178
Target:  5'- cGCgUCGUAcaugacguucuCGCGGCG-CGAGCgGCGGa -3'
miRNA:   3'- cCG-AGCGU-----------GCGCCGCaGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 89161 0.73 0.48988
Target:  5'- uGGaCUCGCugGCGGCGgccuucaGGGCCGUc- -3'
miRNA:   3'- -CC-GAGCGugCGCCGCag-----CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 90627 0.69 0.761908
Target:  5'- cGCU-GCGCGCGGgcCGUCGcgaccccaucaGACCGCGu -3'
miRNA:   3'- cCGAgCGUGCGCC--GCAGC-----------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 91714 0.69 0.761908
Target:  5'- aGGcCUCGCACGCGauca-GGGCCGCGu -3'
miRNA:   3'- -CC-GAGCGUGCGCcgcagCUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 92522 0.67 0.844069
Target:  5'- cGGUgccUCGCGCGCgcguacgGGCGggCGGGCgCGCGc -3'
miRNA:   3'- -CCG---AGCGUGCG-------CCGCa-GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 96416 0.67 0.859572
Target:  5'- cGCUCGCGaGCGGCGgc--ACgGCGGa -3'
miRNA:   3'- cCGAGCGUgCGCCGCagcuUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 99552 0.68 0.770776
Target:  5'- cGuCUCGC-CGCGGCGgacGGCCGUGGu -3'
miRNA:   3'- cC-GAGCGuGCGCCGCagcUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 99942 0.67 0.859572
Target:  5'- cGGaC-CGC-CGCGGCGgCGGcugcuGCUGCGAa -3'
miRNA:   3'- -CC-GaGCGuGCGCCGCaGCU-----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 99947 0.74 0.469472
Target:  5'- cGGCaUCGCcguagucgaccaccGcCGCGGCGugcUCGGGCCGCGGg -3'
miRNA:   3'- -CCG-AGCG--------------U-GCGCCGC---AGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 101076 0.67 0.837192
Target:  5'- aGCUCGCGCcgGUcucgGGCGUuucucgccuuggCGAacGCCGCGAa -3'
miRNA:   3'- cCGAGCGUG--CG----CCGCA------------GCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 101845 0.71 0.629595
Target:  5'- uGCUCGCGgG-GGCGUCGGgggcgcuaucgccGCCGCa- -3'
miRNA:   3'- cCGAGCGUgCgCCGCAGCU-------------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 103750 0.7 0.678448
Target:  5'- cGGUUCGCGCgGCGGgGccucCGGACCGUc- -3'
miRNA:   3'- -CCGAGCGUG-CGCCgCa---GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 104400 0.66 0.866678
Target:  5'- cGGCUCGUGCacuucuaccagGCGcGCaUCGAcccGCCGCGc -3'
miRNA:   3'- -CCGAGCGUG-----------CGC-CGcAGCU---UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 105163 0.69 0.734726
Target:  5'- gGGCaccUCGgACGUGGCG-CGGaugAUCGCGAu -3'
miRNA:   3'- -CCG---AGCgUGCGCCGCaGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 106262 0.66 0.893198
Target:  5'- aGGCgaccgGCGCGCGGCGcacCGAGgUGCu- -3'
miRNA:   3'- -CCGag---CGUGCGCCGCa--GCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 106447 0.67 0.852286
Target:  5'- cGCUCGUcgucgAUGCugGGCGUCGAcCCGUa- -3'
miRNA:   3'- cCGAGCG-----UGCG--CCGCAGCUuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 106560 0.7 0.658384
Target:  5'- gGGCUCGCAgCGCGGgucgcugggcgaCGUgaucuacaacaccCGcAACCGCGAg -3'
miRNA:   3'- -CCGAGCGU-GCGCC------------GCA-------------GC-UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 107513 0.7 0.668908
Target:  5'- cGCUCGCACGaggaGGUG-CGcGCgGCGAc -3'
miRNA:   3'- cCGAGCGUGCg---CCGCaGCuUGgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.