miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 229661 0.66 0.873597
Target:  5'- cGGCagUgGCAgGUgGGCGUCGGGgCGCGc -3'
miRNA:   3'- -CCG--AgCGUgCG-CCGCAGCUUgGCGCu -5'
15954 3' -59.4 NC_004065.1 + 229492 0.68 0.770776
Target:  5'- cGCUCGCACagGgGGCG-CGccACCGCGu -3'
miRNA:   3'- cCGAGCGUG--CgCCGCaGCu-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 223681 0.72 0.592216
Target:  5'- uGCUcacacCGCACGCGaGaaaaGUCaGAACCGCGAu -3'
miRNA:   3'- cCGA-----GCGUGCGC-Cg---CAG-CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 217382 0.76 0.365557
Target:  5'- cGGCUggUGCGguuCGCcGUGUCGAACCGCGAc -3'
miRNA:   3'- -CCGA--GCGU---GCGcCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 216886 0.72 0.592216
Target:  5'- cGUUCGCG-GCGGCG-CGAGgUGCGAg -3'
miRNA:   3'- cCGAGCGUgCGCCGCaGCUUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 213169 0.69 0.734726
Target:  5'- uGGCUCGCccuCGcCGuGCGUgcgcaGAACUGCGGc -3'
miRNA:   3'- -CCGAGCGu--GC-GC-CGCAg----CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 207949 0.7 0.678448
Target:  5'- cGGa--GCGCGCGG-GUUGGgccGCCGCGAc -3'
miRNA:   3'- -CCgagCGUGCGCCgCAGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 207509 0.67 0.852286
Target:  5'- cGCggCGCGauaGCGGuCGUCGGuccuccucGCCGCGc -3'
miRNA:   3'- cCGa-GCGUg--CGCC-GCAGCU--------UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 206530 0.66 0.876312
Target:  5'- cGGCgauaGCGCGgacgcgaaucggacuCGGCGUCgucaucgucgcGAGCCGCGc -3'
miRNA:   3'- -CCGag--CGUGC---------------GCCGCAG-----------CUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 203976 0.76 0.358074
Target:  5'- cGGCUCGCgguucgACGCcGCGUgCGAGCCGCu- -3'
miRNA:   3'- -CCGAGCG------UGCGcCGCA-GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 202570 0.69 0.725498
Target:  5'- aGCUCGCGCGUGauGCG-CGGAgaCGCGGu -3'
miRNA:   3'- cCGAGCGUGCGC--CGCaGCUUg-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 201202 0.7 0.69742
Target:  5'- cGGCUCGggcgGCGCGGCGaCGugcgugcagagGACCcGCGAg -3'
miRNA:   3'- -CCGAGCg---UGCGCCGCaGC-----------UUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 201019 0.7 0.668908
Target:  5'- aGGCcgcgUGCGCGCGGCGccUCGccACCGCc- -3'
miRNA:   3'- -CCGa---GCGUGCGCCGC--AGCu-UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 200969 0.72 0.563709
Target:  5'- cGGCUCcaggaucgGUGCGUGGUGaCGggUCGCGAc -3'
miRNA:   3'- -CCGAG--------CGUGCGCCGCaGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 200868 0.67 0.837192
Target:  5'- gGGggCGCGgGCGGUGgCGAAUCGuCGGu -3'
miRNA:   3'- -CCgaGCGUgCGCCGCaGCUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 200789 0.68 0.796697
Target:  5'- cGGCgguggCGgGCGaCGGCGUCucGgCGCGGg -3'
miRNA:   3'- -CCGa----GCgUGC-GCCGCAGcuUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 199450 0.67 0.837192
Target:  5'- cGCUCGC-CGCGGCG--GAACgGgGGc -3'
miRNA:   3'- cCGAGCGuGCGCCGCagCUUGgCgCU- -5'
15954 3' -59.4 NC_004065.1 + 198874 0.71 0.601777
Target:  5'- cGGC-CGCG-GCGGUGUCGAugCcCGAg -3'
miRNA:   3'- -CCGaGCGUgCGCCGCAGCUugGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 198555 0.76 0.365557
Target:  5'- aGGUcCGCGCGCGGCa-CGGACCGCu- -3'
miRNA:   3'- -CCGaGCGUGCGCCGcaGCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 197192 0.69 0.716199
Target:  5'- cGGUUCGaCugGUGGCGguaGAAgUCGCGGa -3'
miRNA:   3'- -CCGAGC-GugCGCCGCag-CUU-GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.