miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 196365 0.66 0.880327
Target:  5'- cGGCccucccCGCGCGcCGGacgGUCGAAgCGCGc -3'
miRNA:   3'- -CCGa-----GCGUGC-GCCg--CAGCUUgGCGCu -5'
15954 3' -59.4 NC_004065.1 + 196106 0.67 0.852286
Target:  5'- cGGCUCGCcacCGCcaacGGCGgguaCGGcauCCGCGGu -3'
miRNA:   3'- -CCGAGCGu--GCG----CCGCa---GCUu--GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 195115 0.69 0.743875
Target:  5'- aGCUCGC-CgGCGGUGUC--GCCGCa- -3'
miRNA:   3'- cCGAGCGuG-CGCCGCAGcuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 194357 0.71 0.649756
Target:  5'- uGGCUCGCgagcgACGUGGCGaUCGGcgGCCGg-- -3'
miRNA:   3'- -CCGAGCG-----UGCGCCGC-AGCU--UGGCgcu -5'
15954 3' -59.4 NC_004065.1 + 194063 0.67 0.840265
Target:  5'- aGGCaggaGCA-GCGGCG-CGAguccgacgaccugcgGCCGCGAc -3'
miRNA:   3'- -CCGag--CGUgCGCCGCaGCU---------------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 192500 0.66 0.895677
Target:  5'- gGGCUguUGCACGCugagguccaccgcuuGGCGgaGAGCCGCc- -3'
miRNA:   3'- -CCGA--GCGUGCG---------------CCGCagCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 191557 0.68 0.770776
Target:  5'- cGGCUcacucuucCGCACGCGuGCGgUGAucgGCgCGCGAa -3'
miRNA:   3'- -CCGA--------GCGUGCGC-CGCaGCU---UG-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 190299 0.66 0.873597
Target:  5'- cGGCgaucCGguCGCGGCGuUCGGagauACgGUGAg -3'
miRNA:   3'- -CCGa---GCguGCGCCGC-AGCU----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 188971 0.66 0.886861
Target:  5'- cGGCuucgUCGcCGCGCGGCc-CGAGCUcuGCGGc -3'
miRNA:   3'- -CCG----AGC-GUGCGCCGcaGCUUGG--CGCU- -5'
15954 3' -59.4 NC_004065.1 + 187991 0.67 0.837192
Target:  5'- cGGC-CGCGCGCaacauGGCucgCGGAgguCCGCGAc -3'
miRNA:   3'- -CCGaGCGUGCG-----CCGca-GCUU---GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 187391 0.71 0.649756
Target:  5'- aGCUgGCGCGCGGCG-CGGugUgGCGu -3'
miRNA:   3'- cCGAgCGUGCGCCGCaGCUugG-CGCu -5'
15954 3' -59.4 NC_004065.1 + 187029 0.67 0.851548
Target:  5'- uGGCg-GCgGCGCGGCGUCuGAggugaugcguagcACCGCu- -3'
miRNA:   3'- -CCGagCG-UGCGCCGCAG-CU-------------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 186908 0.68 0.813336
Target:  5'- cGGUcuUCGCgaGCGCggaucGGCGcCGggUCGCGGa -3'
miRNA:   3'- -CCG--AGCG--UGCG-----CCGCaGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 186393 0.67 0.844824
Target:  5'- aGGCUgCGUugGUGGUucguGUCugGAACCGCc- -3'
miRNA:   3'- -CCGA-GCGugCGCCG----CAG--CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 184486 0.68 0.779535
Target:  5'- cGGCUgccgccgcCGC-CGCGGCGcCGggUgGCGu -3'
miRNA:   3'- -CCGA--------GCGuGCGCCGCaGCuuGgCGCu -5'
15954 3' -59.4 NC_004065.1 + 172572 0.69 0.716199
Target:  5'- cGCcaUCGcCACGaCGGCGUCGAAgaaGCGAa -3'
miRNA:   3'- cCG--AGC-GUGC-GCCGCAGCUUgg-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 171945 0.66 0.873597
Target:  5'- gGGuCUCGCGCaaGGCGggCGGugGCgGCGGc -3'
miRNA:   3'- -CC-GAGCGUGcgCCGCa-GCU--UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 171805 0.67 0.852286
Target:  5'- -cUUCGUGCGCGGCGaCGugggcuuuGACCGCa- -3'
miRNA:   3'- ccGAGCGUGCGCCGCaGC--------UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 171410 0.66 0.880327
Target:  5'- cGGCgacucCGC-CGCGcGCGUCGAucucgacuCCGCc- -3'
miRNA:   3'- -CCGa----GCGuGCGC-CGCAGCUu-------GGCGcu -5'
15954 3' -59.4 NC_004065.1 + 170703 0.69 0.725498
Target:  5'- cGC-CGCcCGCGGCG-CGAuuGCCGCu- -3'
miRNA:   3'- cCGaGCGuGCGCCGCaGCU--UGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.