miRNA display CGI


Results 41 - 60 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 168694 0.68 0.813336
Target:  5'- cGGgUCGC-CGCGGC-UCucGCCGuCGAg -3'
miRNA:   3'- -CCgAGCGuGCGCCGcAGcuUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 168315 0.71 0.648797
Target:  5'- uGGCUCGCAuccgccgcuacgcCGCGGaCGUgaCGcGCUGCGGa -3'
miRNA:   3'- -CCGAGCGU-------------GCGCC-GCA--GCuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 168165 0.67 0.852286
Target:  5'- aGGCccuucCGCGCGgGGCG-CGAcagcGgCGCGAc -3'
miRNA:   3'- -CCGa----GCGUGCgCCGCaGCU----UgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 167885 0.67 0.829396
Target:  5'- aGCUgauccccuccUGUACGCGGCGaCGAugccgccucCCGCGAg -3'
miRNA:   3'- cCGA----------GCGUGCGCCGCaGCUu--------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 166498 0.67 0.859572
Target:  5'- ---aCGCuCGCGGCGaUCuacGGCCGCGAg -3'
miRNA:   3'- ccgaGCGuGCGCCGC-AGc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 166155 0.7 0.659342
Target:  5'- cGGCg-GCA-GCGGCGcCGAcgucgugcACCGCGAu -3'
miRNA:   3'- -CCGagCGUgCGCCGCaGCU--------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 164627 0.71 0.640159
Target:  5'- aGGCUCGCAgccuCGgaGGaacaGUCGggUCGCGGc -3'
miRNA:   3'- -CCGAGCGU----GCg-CCg---CAGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 164546 0.67 0.859572
Target:  5'- aGCUCGCugugucgagccgGCgGCGGCGcCG-ACCGCu- -3'
miRNA:   3'- cCGAGCG------------UG-CGCCGCaGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 164337 0.7 0.682255
Target:  5'- aGCUCGCACGcCcgcgcgauguccucgGGCGUCGGAucuucCUGCGGc -3'
miRNA:   3'- cCGAGCGUGC-G---------------CCGCAGCUU-----GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 158073 0.67 0.829396
Target:  5'- cGGCUC-CACcgGCGGCGUCGccuCCGaccaGGc -3'
miRNA:   3'- -CCGAGcGUG--CGCCGCAGCuu-GGCg---CU- -5'
15954 3' -59.4 NC_004065.1 + 157945 0.67 0.837192
Target:  5'- aGGC-CGCGCaggGUGGCGUCcaccggcuGggUCGUGAu -3'
miRNA:   3'- -CCGaGCGUG---CGCCGCAG--------CuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 157745 0.66 0.880327
Target:  5'- uGCUCGCGuCGCGGUuccUCGggU-GCGAc -3'
miRNA:   3'- cCGAGCGU-GCGCCGc--AGCuuGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 155226 0.67 0.859572
Target:  5'- cGCUCGUcagcaucuuGCGCGaGCG-Cu-GCCGCGAg -3'
miRNA:   3'- cCGAGCG---------UGCGC-CGCaGcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 153618 0.71 0.649756
Target:  5'- cGGCUCGg--GCGGCGccacUCGGACgGCGGc -3'
miRNA:   3'- -CCGAGCgugCGCCGC----AGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 153245 0.71 0.620953
Target:  5'- cGUUCGCcguCGCGGCGgCGAugCGCc- -3'
miRNA:   3'- cCGAGCGu--GCGCCGCaGCUugGCGcu -5'
15954 3' -59.4 NC_004065.1 + 152297 0.68 0.813336
Target:  5'- uGGCguugCGCAgGCGGaaCGUCGGgauCgGCGAc -3'
miRNA:   3'- -CCGa---GCGUgCGCC--GCAGCUu--GgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 152050 0.67 0.844824
Target:  5'- cGGCUCGC-CGCGGCcagCGucUCGgGGc -3'
miRNA:   3'- -CCGAGCGuGCGCCGca-GCuuGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 151525 0.67 0.859572
Target:  5'- aGGC-CGCugccggccGgGCGGUGUCGGGCgCGCu- -3'
miRNA:   3'- -CCGaGCG--------UgCGCCGCAGCUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 151352 0.67 0.844824
Target:  5'- cGCUCucggGCGcCGCGGCGcCGGccGCUGCGc -3'
miRNA:   3'- cCGAG----CGU-GCGCCGCaGCU--UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 151137 0.67 0.829396
Target:  5'- cGGCggcaaCGC-CGCGaugauCGUCGGcgACCGCGAg -3'
miRNA:   3'- -CCGa----GCGuGCGCc----GCAGCU--UGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.