miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 138088 0.71 0.649756
Target:  5'- uGUUUGCAauuucaucauaGCGaCGUCGGACCGCGAc -3'
miRNA:   3'- cCGAGCGUg----------CGCcGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 195115 0.69 0.743875
Target:  5'- aGCUCGC-CgGCGGUGUC--GCCGCa- -3'
miRNA:   3'- cCGAGCGuG-CGCCGCAGcuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 78190 0.69 0.752938
Target:  5'- uGCUCGacgaACGCGuacccgucgcGCGUCGAG-CGCGAu -3'
miRNA:   3'- cCGAGCg---UGCGC----------CGCAGCUUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 1925 0.69 0.761908
Target:  5'- uGGUccaGUcUGCGGCGUCGucuccACCGCGGa -3'
miRNA:   3'- -CCGag-CGuGCGCCGCAGCu----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 99552 0.68 0.770776
Target:  5'- cGuCUCGC-CGCGGCGgacGGCCGUGGu -3'
miRNA:   3'- cC-GAGCGuGCGCCGCagcUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 229492 0.68 0.770776
Target:  5'- cGCUCGCACagGgGGCG-CGccACCGCGu -3'
miRNA:   3'- cCGAGCGUG--CgCCGCaGCu-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 142498 0.68 0.770776
Target:  5'- cGuCUgGCACGCGcugcGCGUCGAcACCGUGu -3'
miRNA:   3'- cC-GAgCGUGCGC----CGCAGCU-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 191557 0.68 0.770776
Target:  5'- cGGCUcacucuucCGCACGCGuGCGgUGAucgGCgCGCGAa -3'
miRNA:   3'- -CCGA--------GCGUGCGC-CGCaGCU---UG-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 126231 0.68 0.779535
Target:  5'- aGGCggGCGucuucacgcccgUGCGGCGgaUCGAGCCGCc- -3'
miRNA:   3'- -CCGagCGU------------GCGCCGC--AGCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 146859 0.69 0.743875
Target:  5'- --gUCGCGCGCcGUGUCG-ACCGCa- -3'
miRNA:   3'- ccgAGCGUGCGcCGCAGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 128424 0.69 0.729198
Target:  5'- cGGCggCGCcgccaccgagucugaGCGCGGCGgaggCGu-CCGCGGg -3'
miRNA:   3'- -CCGa-GCG---------------UGCGCCGCa---GCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 170703 0.69 0.725498
Target:  5'- cGC-CGCcCGCGGCG-CGAuuGCCGCu- -3'
miRNA:   3'- cCGaGCGuGCGCCGCaGCU--UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 166155 0.7 0.659342
Target:  5'- cGGCg-GCA-GCGGCGcCGAcgucgugcACCGCGAu -3'
miRNA:   3'- -CCGagCGUgCGCCGCaGCU--------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 201019 0.7 0.668908
Target:  5'- aGGCcgcgUGCGCGCGGCGccUCGccACCGCc- -3'
miRNA:   3'- -CCGa---GCGUGCGCCGC--AGCu-UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 103750 0.7 0.678448
Target:  5'- cGGUUCGCGCgGCGGgGccucCGGACCGUc- -3'
miRNA:   3'- -CCGAGCGUG-CGCCgCa---GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 126575 0.7 0.687005
Target:  5'- uGGCgcagcaGCACGCgcaggaaGGUGUCGAucagGCCGCGc -3'
miRNA:   3'- -CCGag----CGUGCG-------CCGCAGCU----UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 201202 0.7 0.69742
Target:  5'- cGGCUCGggcgGCGCGGCGaCGugcgugcagagGACCcGCGAg -3'
miRNA:   3'- -CCGAGCg---UGCGCCGCaGC-----------UUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 62118 0.7 0.706837
Target:  5'- cGCUCGCGggagGCGGCaUCGucGCCGCGu -3'
miRNA:   3'- cCGAGCGUg---CGCCGcAGCu-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 61322 0.69 0.716199
Target:  5'- -cCUCGCACucgaCGGCGa-GAGCCGCGGc -3'
miRNA:   3'- ccGAGCGUGc---GCCGCagCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 197192 0.69 0.716199
Target:  5'- cGGUUCGaCugGUGGCGguaGAAgUCGCGGa -3'
miRNA:   3'- -CCGAGC-GugCGCCGCag-CUU-GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.