miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 203976 0.76 0.358074
Target:  5'- cGGCUCGCgguucgACGCcGCGUgCGAGCCGCu- -3'
miRNA:   3'- -CCGAGCG------UGCGcCGCA-GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 187391 0.71 0.649756
Target:  5'- aGCUgGCGCGCGGCG-CGGugUgGCGu -3'
miRNA:   3'- cCGAgCGUGCGCCGCaGCUugG-CGCu -5'
15954 3' -59.4 NC_004065.1 + 106560 0.7 0.658384
Target:  5'- gGGCUCGCAgCGCGGgucgcugggcgaCGUgaucuacaacaccCGcAACCGCGAg -3'
miRNA:   3'- -CCGAGCGU-GCGCC------------GCA-------------GC-UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 192500 0.66 0.895677
Target:  5'- gGGCUguUGCACGCugagguccaccgcuuGGCGgaGAGCCGCc- -3'
miRNA:   3'- -CCGA--GCGUGCG---------------CCGCagCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 29009 0.75 0.420877
Target:  5'- aGGCgccgcgCGCACGCGGCcUCGAGucagaccggcgUCGCGAc -3'
miRNA:   3'- -CCGa-----GCGUGCGCCGcAGCUU-----------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 30508 0.74 0.480955
Target:  5'- cGGCUgcgCGCACGUGGCGgcc-GCCGCGu -3'
miRNA:   3'- -CCGA---GCGUGCGCCGCagcuUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 89161 0.73 0.48988
Target:  5'- uGGaCUCGCugGCGGCGgccuucaGGGCCGUc- -3'
miRNA:   3'- -CC-GAGCGugCGCCGCag-----CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 22496 0.72 0.544905
Target:  5'- cGCggaGCGCGCGGCGaggaGGACCGaCGAc -3'
miRNA:   3'- cCGag-CGUGCGCCGCag--CUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 130168 0.72 0.592216
Target:  5'- -cCUCGCACgGCGGCGaUCGGGgCGCa- -3'
miRNA:   3'- ccGAGCGUG-CGCCGC-AGCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 168315 0.71 0.648797
Target:  5'- uGGCUCGCAuccgccgcuacgcCGCGGaCGUgaCGcGCUGCGGa -3'
miRNA:   3'- -CCGAGCGU-------------GCGCC-GCA--GCuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 78874 0.71 0.605608
Target:  5'- aGCUCGCGgucgccgacgaucauCGCGGCGUUGccGCCGCc- -3'
miRNA:   3'- cCGAGCGU---------------GCGCCGCAGCu-UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 30453 0.72 0.592216
Target:  5'- uGC-CGaa-GCGGCGUCuGGACCGCGGc -3'
miRNA:   3'- cCGaGCgugCGCCGCAG-CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 217382 0.76 0.365557
Target:  5'- cGGCUggUGCGguuCGCcGUGUCGAACCGCGAc -3'
miRNA:   3'- -CCGA--GCGU---GCGcCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 153245 0.71 0.620953
Target:  5'- cGUUCGCcguCGCGGCGgCGAugCGCc- -3'
miRNA:   3'- cCGAGCGu--GCGCCGCaGCUugGCGcu -5'
15954 3' -59.4 NC_004065.1 + 57952 0.75 0.39655
Target:  5'- cGCUCGaacCGCGGCGgccacggaGGACCGCGAc -3'
miRNA:   3'- cCGAGCgu-GCGCCGCag------CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 120115 0.72 0.58268
Target:  5'- cGGCg-GC-CGCGGCGgaCGAGCCGgGAc -3'
miRNA:   3'- -CCGagCGuGCGCCGCa-GCUUGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 624 0.71 0.629595
Target:  5'- aGGCUCGuCAgGCGGCGgaugUGGgugagugcguccgGCCGCGc -3'
miRNA:   3'- -CCGAGC-GUgCGCCGCa---GCU-------------UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 153618 0.71 0.649756
Target:  5'- cGGCUCGg--GCGGCGccacUCGGACgGCGGc -3'
miRNA:   3'- -CCGAGCgugCGCCGC----AGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 83104 0.75 0.412667
Target:  5'- ---gCGCACGCGGCGgaaGAugCGCGGg -3'
miRNA:   3'- ccgaGCGUGCGCCGCag-CUugGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 67598 0.73 0.48988
Target:  5'- cGGCUCGagauaGCGCGGCGUcCGucgcACCGUa- -3'
miRNA:   3'- -CCGAGCg----UGCGCCGCA-GCu---UGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.