miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 207949 0.7 0.678448
Target:  5'- cGGa--GCGCGCGG-GUUGGgccGCCGCGAc -3'
miRNA:   3'- -CCgagCGUGCGCCgCAGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 106560 0.7 0.658384
Target:  5'- gGGCUCGCAgCGCGGgucgcugggcgaCGUgaucuacaacaccCGcAACCGCGAg -3'
miRNA:   3'- -CCGAGCGU-GCGCC------------GCA-------------GC-UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 30453 0.72 0.592216
Target:  5'- uGC-CGaa-GCGGCGUCuGGACCGCGGc -3'
miRNA:   3'- cCGaGCgugCGCCGCAG-CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 83104 0.75 0.412667
Target:  5'- ---gCGCACGCGGCGgaaGAugCGCGGg -3'
miRNA:   3'- ccgaGCGUGCGCCGCag-CUugGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 143291 0.69 0.752938
Target:  5'- gGGC-CG-AgGCGGCGUCGGggGCCGgGGc -3'
miRNA:   3'- -CCGaGCgUgCGCCGCAGCU--UGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 172572 0.69 0.716199
Target:  5'- cGCcaUCGcCACGaCGGCGUCGAAgaaGCGAa -3'
miRNA:   3'- cCG--AGC-GUGC-GCCGCAGCUUgg-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 187391 0.71 0.649756
Target:  5'- aGCUgGCGCGCGGCG-CGGugUgGCGu -3'
miRNA:   3'- cCGAgCGUGCGCCGCaGCUugG-CGCu -5'
15954 3' -59.4 NC_004065.1 + 57952 0.75 0.39655
Target:  5'- cGCUCGaacCGCGGCGgccacggaGGACCGCGAc -3'
miRNA:   3'- cCGAGCgu-GCGCCGCag------CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 6895 0.69 0.716199
Target:  5'- uGCUCGCccucaucuACGCGGCGgcuucAGCUGCGGg -3'
miRNA:   3'- cCGAGCG--------UGCGCCGCagc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 217382 0.76 0.365557
Target:  5'- cGGCUggUGCGguuCGCcGUGUCGAACCGCGAc -3'
miRNA:   3'- -CCGA--GCGU---GCGcCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 153618 0.71 0.649756
Target:  5'- cGGCUCGg--GCGGCGccacUCGGACgGCGGc -3'
miRNA:   3'- -CCGAGCgugCGCCGC----AGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 164337 0.7 0.682255
Target:  5'- aGCUCGCACGcCcgcgcgauguccucgGGCGUCGGAucuucCUGCGGc -3'
miRNA:   3'- cCGAGCGUGC-G---------------CCGCAGCUU-----GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 153245 0.71 0.620953
Target:  5'- cGUUCGCcguCGCGGCGgCGAugCGCc- -3'
miRNA:   3'- cCGAGCGu--GCGCCGCaGCUugGCGcu -5'
15954 3' -59.4 NC_004065.1 + 130168 0.72 0.592216
Target:  5'- -cCUCGCACgGCGGCGaUCGGGgCGCa- -3'
miRNA:   3'- ccGAGCGUG-CGCCGC-AGCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 89161 0.73 0.48988
Target:  5'- uGGaCUCGCugGCGGCGgccuucaGGGCCGUc- -3'
miRNA:   3'- -CC-GAGCGugCGCCGCag-----CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 29009 0.75 0.420877
Target:  5'- aGGCgccgcgCGCACGCGGCcUCGAGucagaccggcgUCGCGAc -3'
miRNA:   3'- -CCGa-----GCGUGCGCCGcAGCUU-----------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 116723 0.69 0.761908
Target:  5'- cGGCgCGCGaGCGGCGUCGc-CCGUc- -3'
miRNA:   3'- -CCGaGCGUgCGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 91714 0.69 0.761908
Target:  5'- aGGcCUCGCACGCGauca-GGGCCGCGu -3'
miRNA:   3'- -CC-GAGCGUGCGCcgcagCUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 105163 0.69 0.734726
Target:  5'- gGGCaccUCGgACGUGGCG-CGGaugAUCGCGAu -3'
miRNA:   3'- -CCG---AGCgUGCGCCGCaGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 77948 0.69 0.724571
Target:  5'- uGGCUguagaugCGgACGCGGuCGUgGAgcGCCGUGAa -3'
miRNA:   3'- -CCGA-------GCgUGCGCC-GCAgCU--UGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.