miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 64142 0.69 0.742964
Target:  5'- cGGCagCGCGUGCGGCcUCGccuucggGACCGUGAg -3'
miRNA:   3'- -CCGa-GCGUGCGCCGcAGC-------UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 187391 0.71 0.649756
Target:  5'- aGCUgGCGCGCGGCG-CGGugUgGCGu -3'
miRNA:   3'- cCGAgCGUGCGCCGCaGCUugG-CGCu -5'
15954 3' -59.4 NC_004065.1 + 57952 0.75 0.39655
Target:  5'- cGCUCGaacCGCGGCGgccacggaGGACCGCGAc -3'
miRNA:   3'- cCGAGCgu-GCGCCGCag------CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 213169 0.69 0.734726
Target:  5'- uGGCUCGCccuCGcCGuGCGUgcgcaGAACUGCGGc -3'
miRNA:   3'- -CCGAGCGu--GC-GC-CGCAg----CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 217382 0.76 0.365557
Target:  5'- cGGCUggUGCGguuCGCcGUGUCGAACCGCGAc -3'
miRNA:   3'- -CCGA--GCGU---GCGcCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 158073 0.67 0.829396
Target:  5'- cGGCUC-CACcgGCGGCGUCGccuCCGaccaGGc -3'
miRNA:   3'- -CCGAGcGUG--CGCCGCAGCuu-GGCg---CU- -5'
15954 3' -59.4 NC_004065.1 + 29009 0.75 0.420877
Target:  5'- aGGCgccgcgCGCACGCGGCcUCGAGucagaccggcgUCGCGAc -3'
miRNA:   3'- -CCGa-----GCGUGCGCCGcAGCUU-----------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 79622 0.67 0.821442
Target:  5'- cGCUgCGCGCGCGGaCGcugCGGGCgUGCGu -3'
miRNA:   3'- cCGA-GCGUGCGCC-GCa--GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 186908 0.68 0.813336
Target:  5'- cGGUcuUCGCgaGCGCggaucGGCGcCGggUCGCGGa -3'
miRNA:   3'- -CCG--AGCG--UGCG-----CCGCaGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 66725 0.68 0.788178
Target:  5'- aGGCUgGCGCcCGuGcCGUCGGACCccgGCGGc -3'
miRNA:   3'- -CCGAgCGUGcGC-C-GCAGCUUGG---CGCU- -5'
15954 3' -59.4 NC_004065.1 + 132329 0.68 0.779535
Target:  5'- aGCcCGgGCgGCGGCGgcagCGA-CCGCGAg -3'
miRNA:   3'- cCGaGCgUG-CGCCGCa---GCUuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 116723 0.69 0.761908
Target:  5'- cGGCgCGCGaGCGGCGUCGc-CCGUc- -3'
miRNA:   3'- -CCGaGCGUgCGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 91714 0.69 0.761908
Target:  5'- aGGcCUCGCACGCGauca-GGGCCGCGu -3'
miRNA:   3'- -CC-GAGCGUGCGCcgcagCUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 202570 0.69 0.725498
Target:  5'- aGCUCGCGCGUGauGCG-CGGAgaCGCGGu -3'
miRNA:   3'- cCGAGCGUGCGC--CGCaGCUUg-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 6895 0.69 0.716199
Target:  5'- uGCUCGCccucaucuACGCGGCGgcuucAGCUGCGGg -3'
miRNA:   3'- cCGAGCG--------UGCGCCGCagc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 207949 0.7 0.678448
Target:  5'- cGGa--GCGCGCGG-GUUGGgccGCCGCGAc -3'
miRNA:   3'- -CCgagCGUGCGCCgCAGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 106560 0.7 0.658384
Target:  5'- gGGCUCGCAgCGCGGgucgcugggcgaCGUgaucuacaacaccCGcAACCGCGAg -3'
miRNA:   3'- -CCGAGCGU-GCGCC------------GCA-------------GC-UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 153245 0.71 0.620953
Target:  5'- cGUUCGCcguCGCGGCGgCGAugCGCc- -3'
miRNA:   3'- cCGAGCGu--GCGCCGCaGCUugGCGcu -5'
15954 3' -59.4 NC_004065.1 + 130168 0.72 0.592216
Target:  5'- -cCUCGCACgGCGGCGaUCGGGgCGCa- -3'
miRNA:   3'- ccGAGCGUG-CGCCGC-AGCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 89161 0.73 0.48988
Target:  5'- uGGaCUCGCugGCGGCGgccuucaGGGCCGUc- -3'
miRNA:   3'- -CC-GAGCGugCGCCGCag-----CUUGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.