miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 37321 0.66 0.998428
Target:  5'- gGUCGGcaCCAgcuUCCGuCAUCCGGAg -3'
miRNA:   3'- gCAGCUuaGGUag-AGGC-GUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 99272 0.66 0.998428
Target:  5'- uCGUCGucGUCCucCUCCuCGUCCGAu- -3'
miRNA:   3'- -GCAGCu-UAGGuaGAGGcGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 60038 0.66 0.998428
Target:  5'- -cUCGAGcCCGUCaCCGUccccgaAUCCGAACc -3'
miRNA:   3'- gcAGCUUaGGUAGaGGCG------UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 123214 0.66 0.9984
Target:  5'- gCGUCGAccuaacgGUCCGUa--CGCAaCUGAACg -3'
miRNA:   3'- -GCAGCU-------UAGGUAgagGCGUaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 55766 0.66 0.998125
Target:  5'- aGUgGAAgauggCgGUCUCgGCG-CCGAGCa -3'
miRNA:   3'- gCAgCUUa----GgUAGAGgCGUaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 199339 0.66 0.998125
Target:  5'- aCGUCGcGAcggaccagcUCCuugcUCUCCGCGU-CGAACg -3'
miRNA:   3'- -GCAGC-UU---------AGGu---AGAGGCGUAgGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 87907 0.66 0.998125
Target:  5'- cCGUCGAAUCCAUCgacaCaaUAUUCGGAUc -3'
miRNA:   3'- -GCAGCUUAGGUAGa---GgcGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 163428 0.66 0.998125
Target:  5'- --cCGGAUCC-UgUCCGCGUCCa--- -3'
miRNA:   3'- gcaGCUUAGGuAgAGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 43535 0.66 0.998125
Target:  5'- aGUCGAucggcGUCCcgCUCCGgaucguaGUCgGGACu -3'
miRNA:   3'- gCAGCU-----UAGGuaGAGGCg------UAGgCUUG- -5'
15954 5' -51.4 NC_004065.1 + 205928 0.66 0.998092
Target:  5'- aCGUCGGcgCCAUggacgucCUCgGCAUCaucauCGAGCc -3'
miRNA:   3'- -GCAGCUuaGGUA-------GAGgCGUAG-----GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 109639 0.66 0.997773
Target:  5'- cCGUCGAgggcGUCCugcgcgaCUCCGgCAggguccUCCGGGCg -3'
miRNA:   3'- -GCAGCU----UAGGua-----GAGGC-GU------AGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 173935 0.66 0.997773
Target:  5'- gCG-CGGAUCUucaUCCGCAcgaUCCGAAa -3'
miRNA:   3'- -GCaGCUUAGGuagAGGCGU---AGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 196439 0.66 0.997773
Target:  5'- -cUCauGUCCAgcCUCCGCAUCCcgGGACa -3'
miRNA:   3'- gcAGcuUAGGUa-GAGGCGUAGG--CUUG- -5'
15954 5' -51.4 NC_004065.1 + 116109 0.66 0.997773
Target:  5'- uCGUCGAcacgcgCgAUCUCCGCccucucGUCCGGc- -3'
miRNA:   3'- -GCAGCUua----GgUAGAGGCG------UAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 139932 0.66 0.997658
Target:  5'- gGUUGAAcUUCGUCUCCGUcgacaggaugaaguAUCuCGGGCa -3'
miRNA:   3'- gCAGCUU-AGGUAGAGGCG--------------UAG-GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 119595 0.66 0.997368
Target:  5'- --cCGAGUCUGUUUCCGCggCUGGGa -3'
miRNA:   3'- gcaGCUUAGGUAGAGGCGuaGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 199655 0.66 0.997368
Target:  5'- gGUCacGUCCAUgUCCGgGUCCGu-- -3'
miRNA:   3'- gCAGcuUAGGUAgAGGCgUAGGCuug -5'
15954 5' -51.4 NC_004065.1 + 120800 0.66 0.997368
Target:  5'- --cCGccgCCGUCUcCCGUcgCCGAGCa -3'
miRNA:   3'- gcaGCuuaGGUAGA-GGCGuaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 112869 0.66 0.997368
Target:  5'- cCGUCGGcgCUGUCggugCCGUucaccGUCCuGAGCg -3'
miRNA:   3'- -GCAGCUuaGGUAGa---GGCG-----UAGG-CUUG- -5'
15954 5' -51.4 NC_004065.1 + 117457 0.66 0.996904
Target:  5'- gCGUCG--UCCggCUCCGCggCCGcuCg -3'
miRNA:   3'- -GCAGCuuAGGuaGAGGCGuaGGCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.