Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15954 | 5' | -51.4 | NC_004065.1 | + | 41029 | 0.69 | 0.984107 |
Target: 5'- cCGU-GAGUCCGUCgaagCCGCAgagCuCGGGCc -3' miRNA: 3'- -GCAgCUUAGGUAGa---GGCGUa--G-GCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 106511 | 0.69 | 0.977168 |
Target: 5'- aGUCGAAUCCGgcacgcaguuagccUCgUCCGaCAUCugCGAACg -3' miRNA: 3'- gCAGCUUAGGU--------------AG-AGGC-GUAG--GCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 175485 | 0.69 | 0.977878 |
Target: 5'- aCG-CGGAgagaacuccaucUCCAUCUCCGUAUCCu--- -3' miRNA: 3'- -GCaGCUU------------AGGUAGAGGCGUAGGcuug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 31032 | 0.69 | 0.977878 |
Target: 5'- aCGgCGAAcgCCAUCUCCGCGUacaagCGggUg -3' miRNA: 3'- -GCaGCUUa-GGUAGAGGCGUAg----GCuuG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 64367 | 0.69 | 0.983923 |
Target: 5'- -cUCGGAUCgCGUC-CUGCAggcucugUCCGAGCa -3' miRNA: 3'- gcAGCUUAG-GUAGaGGCGU-------AGGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 9407 | 0.68 | 0.992492 |
Target: 5'- aCGUaGA--CCGUUUCCGCGUCCGuuuCa -3' miRNA: 3'- -GCAgCUuaGGUAGAGGCGUAGGCuu-G- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 43751 | 0.68 | 0.987451 |
Target: 5'- gGUUucAUCCG-CUCCGUGUCCGGGa -3' miRNA: 3'- gCAGcuUAGGUaGAGGCGUAGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 52370 | 0.68 | 0.987451 |
Target: 5'- uGUCccccGUCCGUCUCCGguUCCa--- -3' miRNA: 3'- gCAGcu--UAGGUAGAGGCguAGGcuug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 18771 | 0.68 | 0.988905 |
Target: 5'- --aCGAgacGUUCGUCUUgGCGUCCGAGg -3' miRNA: 3'- gcaGCU---UAGGUAGAGgCGUAGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 223966 | 0.68 | 0.988905 |
Target: 5'- aGUCGAAUgguacaCCGUCUgugagcaaCGUGUCCGGACc -3' miRNA: 3'- gCAGCUUA------GGUAGAg-------GCGUAGGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 146192 | 0.68 | 0.991417 |
Target: 5'- cCGUgGGcgCCAaguUCUCCGUcUCCGAc- -3' miRNA: 3'- -GCAgCUuaGGU---AGAGGCGuAGGCUug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 123502 | 0.68 | 0.991417 |
Target: 5'- gGUCGAcacgaaCGUCUgCGgGUCCGGGCu -3' miRNA: 3'- gCAGCUuag---GUAGAgGCgUAGGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 27084 | 0.68 | 0.992492 |
Target: 5'- uGUCGcGUCC-UCUCCcCAggaccCCGAACg -3' miRNA: 3'- gCAGCuUAGGuAGAGGcGUa----GGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 198202 | 0.68 | 0.992492 |
Target: 5'- gGUCGGc-CCugaaCUCCGCGUCCGGc- -3' miRNA: 3'- gCAGCUuaGGua--GAGGCGUAGGCUug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 31128 | 0.68 | 0.988905 |
Target: 5'- cCGUCa---CCGUCUCCGUcUCCGAc- -3' miRNA: 3'- -GCAGcuuaGGUAGAGGCGuAGGCUug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 32810 | 0.68 | 0.992492 |
Target: 5'- uCGUCGuccucguagCCGUCgggCCGCucGUCCGAGa -3' miRNA: 3'- -GCAGCuua------GGUAGa--GGCG--UAGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 84708 | 0.68 | 0.990224 |
Target: 5'- uGUCGAGUgUcgCUCgGCAcCCGAAg -3' miRNA: 3'- gCAGCUUAgGuaGAGgCGUaGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 90818 | 0.68 | 0.987451 |
Target: 5'- gGUCacGUUCGUCgCCGCAUCCcGACa -3' miRNA: 3'- gCAGcuUAGGUAGaGGCGUAGGcUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 167367 | 0.68 | 0.987451 |
Target: 5'- gGUCGccgcugCCGUCUCCGCcgCCa--- -3' miRNA: 3'- gCAGCuua---GGUAGAGGCGuaGGcuug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 172230 | 0.68 | 0.990224 |
Target: 5'- cCGUCGggUCC-UC-CCGUca-CGAACg -3' miRNA: 3'- -GCAGCuuAGGuAGaGGCGuagGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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