miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 26081 1.1 0.012159
Target:  5'- cCGUCGAAUCCAUCUCCGCAUCCGAACc -3'
miRNA:   3'- -GCAGCUUAGGUAGAGGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 62166 0.8 0.583656
Target:  5'- uGUCGGAUCCAucacuaacUCUCCGCucUCCGAuaACa -3'
miRNA:   3'- gCAGCUUAGGU--------AGAGGCGu-AGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 143099 0.79 0.614138
Target:  5'- aCGUgGggUCCAUCUUCGCGgcgCCGGGa -3'
miRNA:   3'- -GCAgCuuAGGUAGAGGCGUa--GGCUUg -5'
15954 5' -51.4 NC_004065.1 + 188324 0.77 0.705447
Target:  5'- uGUUGAuggCCGUCUCCGCGUCCcucGCg -3'
miRNA:   3'- gCAGCUua-GGUAGAGGCGUAGGcu-UG- -5'
15954 5' -51.4 NC_004065.1 + 174691 0.77 0.725284
Target:  5'- cCGUCGggUCCGUgUCCGUuUCCGccGCu -3'
miRNA:   3'- -GCAGCuuAGGUAgAGGCGuAGGCu-UG- -5'
15954 5' -51.4 NC_004065.1 + 211369 0.77 0.744802
Target:  5'- gCGUCGAucacaCCAcauucucCUCCGUAUCCGAGCa -3'
miRNA:   3'- -GCAGCUua---GGUa------GAGGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 90399 0.74 0.873861
Target:  5'- uCGUCGAcacgCCAccgCUCCGCAUCUGcGCc -3'
miRNA:   3'- -GCAGCUua--GGUa--GAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 101639 0.73 0.880996
Target:  5'- gGUCGAAUCCGggcacCUCUGgGUCUGAAg -3'
miRNA:   3'- gCAGCUUAGGUa----GAGGCgUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 55599 0.73 0.901066
Target:  5'- aCGUaCGAGUCCGUgaCCGCGUCCc--- -3'
miRNA:   3'- -GCA-GCUUAGGUAgaGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 91471 0.71 0.948234
Target:  5'- cCGUCGccgucAGUCCGccgccgcUCgugCCGCGUUCGAGCg -3'
miRNA:   3'- -GCAGC-----UUAGGU-------AGa--GGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 111767 0.71 0.948658
Target:  5'- aCGUCGAGgcgCCGgcgagCUCCacGCGUCCGucGACg -3'
miRNA:   3'- -GCAGCUUa--GGUa----GAGG--CGUAGGC--UUG- -5'
15954 5' -51.4 NC_004065.1 + 100404 0.71 0.956657
Target:  5'- cCGgCGggUCCAguUCUCCGCG-CUGAccGCg -3'
miRNA:   3'- -GCaGCuuAGGU--AGAGGCGUaGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 172746 0.7 0.963762
Target:  5'- ---aGAAUCCGUCUUCacgGCGUCCGAu- -3'
miRNA:   3'- gcagCUUAGGUAGAGG---CGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 29918 0.7 0.96699
Target:  5'- gCGgacCGAcgCCGUCUUCGUcagaGUCUGAGCa -3'
miRNA:   3'- -GCa--GCUuaGGUAGAGGCG----UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 23487 0.7 0.97001
Target:  5'- aCGcCGAGUCCga-UUCGCGUCCGcGCu -3'
miRNA:   3'- -GCaGCUUAGGuagAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 23724 0.7 0.975447
Target:  5'- aGUCGcGGUCCGUCcggUCCGUccgAUCCGAu- -3'
miRNA:   3'- gCAGC-UUAGGUAG---AGGCG---UAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 124484 0.7 0.975447
Target:  5'- gCGcCGggUCCAgggccgcgcggaUCUCCaGCAUCUGcGCg -3'
miRNA:   3'- -GCaGCuuAGGU------------AGAGG-CGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 106511 0.69 0.977168
Target:  5'- aGUCGAAUCCGgcacgcaguuagccUCgUCCGaCAUCugCGAACg -3'
miRNA:   3'- gCAGCUUAGGU--------------AG-AGGC-GUAG--GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 175485 0.69 0.977878
Target:  5'- aCG-CGGAgagaacuccaucUCCAUCUCCGUAUCCu--- -3'
miRNA:   3'- -GCaGCUU------------AGGUAGAGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 31032 0.69 0.977878
Target:  5'- aCGgCGAAcgCCAUCUCCGCGUacaagCGggUg -3'
miRNA:   3'- -GCaGCUUa-GGUAGAGGCGUAg----GCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.