miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 160536 0.67 0.996374
Target:  5'- gCGUCGAGUUCuUCUgguuggCCGCGUaCCGcAGCc -3'
miRNA:   3'- -GCAGCUUAGGuAGA------GGCGUA-GGC-UUG- -5'
15954 5' -51.4 NC_004065.1 + 198662 0.67 0.996374
Target:  5'- cCGaUCaGAcUCCGUC-CCGCGgauuuUCCGGACg -3'
miRNA:   3'- -GC-AG-CUuAGGUAGaGGCGU-----AGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 6219 0.67 0.996374
Target:  5'- gGUCGuguUCUAUCUgCCGCA-CCGGc- -3'
miRNA:   3'- gCAGCuu-AGGUAGA-GGCGUaGGCUug -5'
15954 5' -51.4 NC_004065.1 + 126585 0.67 0.996374
Target:  5'- -cUCGggUCCG-CUggagCUGCcgCCGAACa -3'
miRNA:   3'- gcAGCuuAGGUaGA----GGCGuaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 93375 0.67 0.996374
Target:  5'- cCGUCGcucgccaccagGAUCCAcg-CCGC-UCCGGACc -3'
miRNA:   3'- -GCAGC-----------UUAGGUagaGGCGuAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 186518 0.67 0.996021
Target:  5'- gGUCGGAucUCCGUCUCUccaagugauguaucgGCGgcgCCGAGg -3'
miRNA:   3'- gCAGCUU--AGGUAGAGG---------------CGUa--GGCUUg -5'
15954 5' -51.4 NC_004065.1 + 122795 0.67 0.995771
Target:  5'- gGUgaGAGU-CAUCUCgCGCAUCCGcGCu -3'
miRNA:   3'- gCAg-CUUAgGUAGAG-GCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 184171 0.67 0.995707
Target:  5'- cCGUCGGAgcggCCAUCgcgucCCGUgcggccgGUCCGAuACa -3'
miRNA:   3'- -GCAGCUUa---GGUAGa----GGCG-------UAGGCU-UG- -5'
15954 5' -51.4 NC_004065.1 + 129616 0.67 0.995089
Target:  5'- uCGUgCGGAUCaugaugCUCCGCAUCUgcggucugGAACa -3'
miRNA:   3'- -GCA-GCUUAGgua---GAGGCGUAGG--------CUUG- -5'
15954 5' -51.4 NC_004065.1 + 197078 0.67 0.995089
Target:  5'- aCGUCGAcgCCcgCaUCCGCGcgggagCCGAc- -3'
miRNA:   3'- -GCAGCUuaGGuaG-AGGCGUa-----GGCUug -5'
15954 5' -51.4 NC_004065.1 + 123002 0.67 0.99432
Target:  5'- gGUCGuggguGUCgGUCUCCGgcgagcgugaCGUCCGAcgGCg -3'
miRNA:   3'- gCAGCu----UAGgUAGAGGC----------GUAGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 117959 0.67 0.993457
Target:  5'- gCGUC---UUCGUCUCUGCGguuaCCGAACu -3'
miRNA:   3'- -GCAGcuuAGGUAGAGGCGUa---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 131809 0.67 0.993457
Target:  5'- uGUUGGAUCUcgUUCUG-GUCCGGGCu -3'
miRNA:   3'- gCAGCUUAGGuaGAGGCgUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 198202 0.68 0.992492
Target:  5'- gGUCGGc-CCugaaCUCCGCGUCCGGc- -3'
miRNA:   3'- gCAGCUuaGGua--GAGGCGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 205167 0.68 0.992492
Target:  5'- cCGUCGAGgccgCCGUCgCCGCcaacaUCGGGCg -3'
miRNA:   3'- -GCAGCUUa---GGUAGaGGCGua---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 9407 0.68 0.992492
Target:  5'- aCGUaGA--CCGUUUCCGCGUCCGuuuCa -3'
miRNA:   3'- -GCAgCUuaGGUAGAGGCGUAGGCuu-G- -5'
15954 5' -51.4 NC_004065.1 + 32810 0.68 0.992492
Target:  5'- uCGUCGuccucguagCCGUCgggCCGCucGUCCGAGa -3'
miRNA:   3'- -GCAGCuua------GGUAGa--GGCG--UAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 27084 0.68 0.992492
Target:  5'- uGUCGcGUCC-UCUCCcCAggaccCCGAACg -3'
miRNA:   3'- gCAGCuUAGGuAGAGGcGUa----GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 146192 0.68 0.991417
Target:  5'- cCGUgGGcgCCAaguUCUCCGUcUCCGAc- -3'
miRNA:   3'- -GCAgCUuaGGU---AGAGGCGuAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 123502 0.68 0.991417
Target:  5'- gGUCGAcacgaaCGUCUgCGgGUCCGGGCu -3'
miRNA:   3'- gCAGCUuag---GUAGAgGCgUAGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.