Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15954 | 5' | -51.4 | NC_004065.1 | + | 84708 | 0.68 | 0.990224 |
Target: 5'- uGUCGAGUgUcgCUCgGCAcCCGAAg -3' miRNA: 3'- gCAGCUUAgGuaGAGgCGUaGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 172230 | 0.68 | 0.990224 |
Target: 5'- cCGUCGggUCC-UC-CCGUca-CGAACg -3' miRNA: 3'- -GCAGCuuAGGuAGaGGCGuagGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 223966 | 0.68 | 0.988905 |
Target: 5'- aGUCGAAUgguacaCCGUCUgugagcaaCGUGUCCGGACc -3' miRNA: 3'- gCAGCUUA------GGUAGAg-------GCGUAGGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 31128 | 0.68 | 0.988905 |
Target: 5'- cCGUCa---CCGUCUCCGUcUCCGAc- -3' miRNA: 3'- -GCAGcuuaGGUAGAGGCGuAGGCUug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 18771 | 0.68 | 0.988905 |
Target: 5'- --aCGAgacGUUCGUCUUgGCGUCCGAGg -3' miRNA: 3'- gcaGCU---UAGGUAGAGgCGUAGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 43751 | 0.68 | 0.987451 |
Target: 5'- gGUUucAUCCG-CUCCGUGUCCGGGa -3' miRNA: 3'- gCAGcuUAGGUaGAGGCGUAGGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 52370 | 0.68 | 0.987451 |
Target: 5'- uGUCccccGUCCGUCUCCGguUCCa--- -3' miRNA: 3'- gCAGcu--UAGGUAGAGGCguAGGcuug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 167367 | 0.68 | 0.987451 |
Target: 5'- gGUCGccgcugCCGUCUCCGCcgCCa--- -3' miRNA: 3'- gCAGCuua---GGUAGAGGCGuaGGcuug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 90818 | 0.68 | 0.987451 |
Target: 5'- gGUCacGUUCGUCgCCGCAUCCcGACa -3' miRNA: 3'- gCAGcuUAGGUAGaGGCGUAGGcUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 86778 | 0.69 | 0.985855 |
Target: 5'- cCG-CGggUCCAUCUCC-CAccccCCGGAUu -3' miRNA: 3'- -GCaGCuuAGGUAGAGGcGUa---GGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 148056 | 0.69 | 0.985854 |
Target: 5'- aCGUCGAcgacaucaucAUCCAgaUCUCCuGCGUCUGuuucGGCg -3' miRNA: 3'- -GCAGCU----------UAGGU--AGAGG-CGUAGGC----UUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 18297 | 0.69 | 0.984107 |
Target: 5'- uCGUCGAgcggcuggacgGUCCGUCUUCGguUcuCCGAGg -3' miRNA: 3'- -GCAGCU-----------UAGGUAGAGGCguA--GGCUUg -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 41029 | 0.69 | 0.984107 |
Target: 5'- cCGU-GAGUCCGUCgaagCCGCAgagCuCGGGCc -3' miRNA: 3'- -GCAgCUUAGGUAGa---GGCGUa--G-GCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 64367 | 0.69 | 0.983923 |
Target: 5'- -cUCGGAUCgCGUC-CUGCAggcucugUCCGAGCa -3' miRNA: 3'- gcAGCUUAG-GUAGaGGCGU-------AGGCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 31032 | 0.69 | 0.977878 |
Target: 5'- aCGgCGAAcgCCAUCUCCGCGUacaagCGggUg -3' miRNA: 3'- -GCaGCUUa-GGUAGAGGCGUAg----GCuuG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 175485 | 0.69 | 0.977878 |
Target: 5'- aCG-CGGAgagaacuccaucUCCAUCUCCGUAUCCu--- -3' miRNA: 3'- -GCaGCUU------------AGGUAGAGGCGUAGGcuug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 106511 | 0.69 | 0.977168 |
Target: 5'- aGUCGAAUCCGgcacgcaguuagccUCgUCCGaCAUCugCGAACg -3' miRNA: 3'- gCAGCUUAGGU--------------AG-AGGC-GUAG--GCUUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 124484 | 0.7 | 0.975447 |
Target: 5'- gCGcCGggUCCAgggccgcgcggaUCUCCaGCAUCUGcGCg -3' miRNA: 3'- -GCaGCuuAGGU------------AGAGG-CGUAGGCuUG- -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 23724 | 0.7 | 0.975447 |
Target: 5'- aGUCGcGGUCCGUCcggUCCGUccgAUCCGAu- -3' miRNA: 3'- gCAGC-UUAGGUAG---AGGCG---UAGGCUug -5' |
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15954 | 5' | -51.4 | NC_004065.1 | + | 23487 | 0.7 | 0.97001 |
Target: 5'- aCGcCGAGUCCga-UUCGCGUCCGcGCu -3' miRNA: 3'- -GCaGCUUAGGuagAGGCGUAGGCuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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