miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 6219 0.67 0.996374
Target:  5'- gGUCGuguUCUAUCUgCCGCA-CCGGc- -3'
miRNA:   3'- gCAGCuu-AGGUAGA-GGCGUaGGCUug -5'
15954 5' -51.4 NC_004065.1 + 9407 0.68 0.992492
Target:  5'- aCGUaGA--CCGUUUCCGCGUCCGuuuCa -3'
miRNA:   3'- -GCAgCUuaGGUAGAGGCGUAGGCuu-G- -5'
15954 5' -51.4 NC_004065.1 + 18297 0.69 0.984107
Target:  5'- uCGUCGAgcggcuggacgGUCCGUCUUCGguUcuCCGAGg -3'
miRNA:   3'- -GCAGCU-----------UAGGUAGAGGCguA--GGCUUg -5'
15954 5' -51.4 NC_004065.1 + 18771 0.68 0.988905
Target:  5'- --aCGAgacGUUCGUCUUgGCGUCCGAGg -3'
miRNA:   3'- gcaGCU---UAGGUAGAGgCGUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 23487 0.7 0.97001
Target:  5'- aCGcCGAGUCCga-UUCGCGUCCGcGCu -3'
miRNA:   3'- -GCaGCUUAGGuagAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 23724 0.7 0.975447
Target:  5'- aGUCGcGGUCCGUCcggUCCGUccgAUCCGAu- -3'
miRNA:   3'- gCAGC-UUAGGUAG---AGGCG---UAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 26081 1.1 0.012159
Target:  5'- cCGUCGAAUCCAUCUCCGCAUCCGAACc -3'
miRNA:   3'- -GCAGCUUAGGUAGAGGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 27084 0.68 0.992492
Target:  5'- uGUCGcGUCC-UCUCCcCAggaccCCGAACg -3'
miRNA:   3'- gCAGCuUAGGuAGAGGcGUa----GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 29918 0.7 0.96699
Target:  5'- gCGgacCGAcgCCGUCUUCGUcagaGUCUGAGCa -3'
miRNA:   3'- -GCa--GCUuaGGUAGAGGCG----UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 31032 0.69 0.977878
Target:  5'- aCGgCGAAcgCCAUCUCCGCGUacaagCGggUg -3'
miRNA:   3'- -GCaGCUUa-GGUAGAGGCGUAg----GCuuG- -5'
15954 5' -51.4 NC_004065.1 + 31128 0.68 0.988905
Target:  5'- cCGUCa---CCGUCUCCGUcUCCGAc- -3'
miRNA:   3'- -GCAGcuuaGGUAGAGGCGuAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 32810 0.68 0.992492
Target:  5'- uCGUCGuccucguagCCGUCgggCCGCucGUCCGAGa -3'
miRNA:   3'- -GCAGCuua------GGUAGa--GGCG--UAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 37321 0.66 0.998428
Target:  5'- gGUCGGcaCCAgcuUCCGuCAUCCGGAg -3'
miRNA:   3'- gCAGCUuaGGUag-AGGC-GUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 41029 0.69 0.984107
Target:  5'- cCGU-GAGUCCGUCgaagCCGCAgagCuCGGGCc -3'
miRNA:   3'- -GCAgCUUAGGUAGa---GGCGUa--G-GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 43535 0.66 0.998125
Target:  5'- aGUCGAucggcGUCCcgCUCCGgaucguaGUCgGGACu -3'
miRNA:   3'- gCAGCU-----UAGGuaGAGGCg------UAGgCUUG- -5'
15954 5' -51.4 NC_004065.1 + 43751 0.68 0.987451
Target:  5'- gGUUucAUCCG-CUCCGUGUCCGGGa -3'
miRNA:   3'- gCAGcuUAGGUaGAGGCGUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 52370 0.68 0.987451
Target:  5'- uGUCccccGUCCGUCUCCGguUCCa--- -3'
miRNA:   3'- gCAGcu--UAGGUAGAGGCguAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 55599 0.73 0.901066
Target:  5'- aCGUaCGAGUCCGUgaCCGCGUCCc--- -3'
miRNA:   3'- -GCA-GCUUAGGUAgaGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 55766 0.66 0.998125
Target:  5'- aGUgGAAgauggCgGUCUCgGCG-CCGAGCa -3'
miRNA:   3'- gCAgCUUa----GgUAGAGgCGUaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 60038 0.66 0.998428
Target:  5'- -cUCGAGcCCGUCaCCGUccccgaAUCCGAACc -3'
miRNA:   3'- gcAGCUUaGGUAGaGGCG------UAGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.