miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 62166 0.8 0.583656
Target:  5'- uGUCGGAUCCAucacuaacUCUCCGCucUCCGAuaACa -3'
miRNA:   3'- gCAGCUUAGGU--------AGAGGCGu-AGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 64367 0.69 0.983923
Target:  5'- -cUCGGAUCgCGUC-CUGCAggcucugUCCGAGCa -3'
miRNA:   3'- gcAGCUUAG-GUAGaGGCGU-------AGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 84708 0.68 0.990224
Target:  5'- uGUCGAGUgUcgCUCgGCAcCCGAAg -3'
miRNA:   3'- gCAGCUUAgGuaGAGgCGUaGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 86778 0.69 0.985855
Target:  5'- cCG-CGggUCCAUCUCC-CAccccCCGGAUu -3'
miRNA:   3'- -GCaGCuuAGGUAGAGGcGUa---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 87907 0.66 0.998125
Target:  5'- cCGUCGAAUCCAUCgacaCaaUAUUCGGAUc -3'
miRNA:   3'- -GCAGCUUAGGUAGa---GgcGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 90399 0.74 0.873861
Target:  5'- uCGUCGAcacgCCAccgCUCCGCAUCUGcGCc -3'
miRNA:   3'- -GCAGCUua--GGUa--GAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 90818 0.68 0.987451
Target:  5'- gGUCacGUUCGUCgCCGCAUCCcGACa -3'
miRNA:   3'- gCAGcuUAGGUAGaGGCGUAGGcUUG- -5'
15954 5' -51.4 NC_004065.1 + 91471 0.71 0.948234
Target:  5'- cCGUCGccgucAGUCCGccgccgcUCgugCCGCGUUCGAGCg -3'
miRNA:   3'- -GCAGC-----UUAGGU-------AGa--GGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 93375 0.67 0.996374
Target:  5'- cCGUCGcucgccaccagGAUCCAcg-CCGC-UCCGGACc -3'
miRNA:   3'- -GCAGC-----------UUAGGUagaGGCGuAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 99272 0.66 0.998428
Target:  5'- uCGUCGucGUCCucCUCCuCGUCCGAu- -3'
miRNA:   3'- -GCAGCu-UAGGuaGAGGcGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 100404 0.71 0.956657
Target:  5'- cCGgCGggUCCAguUCUCCGCG-CUGAccGCg -3'
miRNA:   3'- -GCaGCuuAGGU--AGAGGCGUaGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 101639 0.73 0.880996
Target:  5'- gGUCGAAUCCGggcacCUCUGgGUCUGAAg -3'
miRNA:   3'- gCAGCUUAGGUa----GAGGCgUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 106511 0.69 0.977168
Target:  5'- aGUCGAAUCCGgcacgcaguuagccUCgUCCGaCAUCugCGAACg -3'
miRNA:   3'- gCAGCUUAGGU--------------AG-AGGC-GUAG--GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 109639 0.66 0.997773
Target:  5'- cCGUCGAgggcGUCCugcgcgaCUCCGgCAggguccUCCGGGCg -3'
miRNA:   3'- -GCAGCU----UAGGua-----GAGGC-GU------AGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 111767 0.71 0.948658
Target:  5'- aCGUCGAGgcgCCGgcgagCUCCacGCGUCCGucGACg -3'
miRNA:   3'- -GCAGCUUa--GGUa----GAGG--CGUAGGC--UUG- -5'
15954 5' -51.4 NC_004065.1 + 112869 0.66 0.997368
Target:  5'- cCGUCGGcgCUGUCggugCCGUucaccGUCCuGAGCg -3'
miRNA:   3'- -GCAGCUuaGGUAGa---GGCG-----UAGG-CUUG- -5'
15954 5' -51.4 NC_004065.1 + 116109 0.66 0.997773
Target:  5'- uCGUCGAcacgcgCgAUCUCCGCccucucGUCCGGc- -3'
miRNA:   3'- -GCAGCUua----GgUAGAGGCG------UAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 117457 0.66 0.996904
Target:  5'- gCGUCG--UCCggCUCCGCggCCGcuCg -3'
miRNA:   3'- -GCAGCuuAGGuaGAGGCGuaGGCuuG- -5'
15954 5' -51.4 NC_004065.1 + 117959 0.67 0.993457
Target:  5'- gCGUC---UUCGUCUCUGCGguuaCCGAACu -3'
miRNA:   3'- -GCAGcuuAGGUAGAGGCGUa---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 119595 0.66 0.997368
Target:  5'- --cCGAGUCUGUUUCCGCggCUGGGa -3'
miRNA:   3'- gcaGCUUAGGUAGAGGCGuaGGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.