miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 223966 0.68 0.988905
Target:  5'- aGUCGAAUgguacaCCGUCUgugagcaaCGUGUCCGGACc -3'
miRNA:   3'- gCAGCUUA------GGUAGAg-------GCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 211369 0.77 0.744802
Target:  5'- gCGUCGAucacaCCAcauucucCUCCGUAUCCGAGCa -3'
miRNA:   3'- -GCAGCUua---GGUa------GAGGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 205928 0.66 0.998092
Target:  5'- aCGUCGGcgCCAUggacgucCUCgGCAUCaucauCGAGCc -3'
miRNA:   3'- -GCAGCUuaGGUA-------GAGgCGUAG-----GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 205167 0.68 0.992492
Target:  5'- cCGUCGAGgccgCCGUCgCCGCcaacaUCGGGCg -3'
miRNA:   3'- -GCAGCUUa---GGUAGaGGCGua---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 199655 0.66 0.997368
Target:  5'- gGUCacGUCCAUgUCCGgGUCCGu-- -3'
miRNA:   3'- gCAGcuUAGGUAgAGGCgUAGGCuug -5'
15954 5' -51.4 NC_004065.1 + 199339 0.66 0.998125
Target:  5'- aCGUCGcGAcggaccagcUCCuugcUCUCCGCGU-CGAACg -3'
miRNA:   3'- -GCAGC-UU---------AGGu---AGAGGCGUAgGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 198662 0.67 0.996374
Target:  5'- cCGaUCaGAcUCCGUC-CCGCGgauuuUCCGGACg -3'
miRNA:   3'- -GC-AG-CUuAGGUAGaGGCGU-----AGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 198202 0.68 0.992492
Target:  5'- gGUCGGc-CCugaaCUCCGCGUCCGGc- -3'
miRNA:   3'- gCAGCUuaGGua--GAGGCGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 197078 0.67 0.995089
Target:  5'- aCGUCGAcgCCcgCaUCCGCGcgggagCCGAc- -3'
miRNA:   3'- -GCAGCUuaGGuaG-AGGCGUa-----GGCUug -5'
15954 5' -51.4 NC_004065.1 + 196439 0.66 0.997773
Target:  5'- -cUCauGUCCAgcCUCCGCAUCCcgGGACa -3'
miRNA:   3'- gcAGcuUAGGUa-GAGGCGUAGG--CUUG- -5'
15954 5' -51.4 NC_004065.1 + 188324 0.77 0.705447
Target:  5'- uGUUGAuggCCGUCUCCGCGUCCcucGCg -3'
miRNA:   3'- gCAGCUua-GGUAGAGGCGUAGGcu-UG- -5'
15954 5' -51.4 NC_004065.1 + 186518 0.67 0.996021
Target:  5'- gGUCGGAucUCCGUCUCUccaagugauguaucgGCGgcgCCGAGg -3'
miRNA:   3'- gCAGCUU--AGGUAGAGG---------------CGUa--GGCUUg -5'
15954 5' -51.4 NC_004065.1 + 184171 0.67 0.995707
Target:  5'- cCGUCGGAgcggCCAUCgcgucCCGUgcggccgGUCCGAuACa -3'
miRNA:   3'- -GCAGCUUa---GGUAGa----GGCG-------UAGGCU-UG- -5'
15954 5' -51.4 NC_004065.1 + 175485 0.69 0.977878
Target:  5'- aCG-CGGAgagaacuccaucUCCAUCUCCGUAUCCu--- -3'
miRNA:   3'- -GCaGCUU------------AGGUAGAGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 174691 0.77 0.725284
Target:  5'- cCGUCGggUCCGUgUCCGUuUCCGccGCu -3'
miRNA:   3'- -GCAGCuuAGGUAgAGGCGuAGGCu-UG- -5'
15954 5' -51.4 NC_004065.1 + 173935 0.66 0.997773
Target:  5'- gCG-CGGAUCUucaUCCGCAcgaUCCGAAa -3'
miRNA:   3'- -GCaGCUUAGGuagAGGCGU---AGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 172746 0.7 0.963762
Target:  5'- ---aGAAUCCGUCUUCacgGCGUCCGAu- -3'
miRNA:   3'- gcagCUUAGGUAGAGG---CGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 172230 0.68 0.990224
Target:  5'- cCGUCGggUCC-UC-CCGUca-CGAACg -3'
miRNA:   3'- -GCAGCuuAGGuAGaGGCGuagGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 167367 0.68 0.987451
Target:  5'- gGUCGccgcugCCGUCUCCGCcgCCa--- -3'
miRNA:   3'- gCAGCuua---GGUAGAGGCGuaGGcuug -5'
15954 5' -51.4 NC_004065.1 + 163428 0.66 0.998125
Target:  5'- --cCGGAUCC-UgUCCGCGUCCa--- -3'
miRNA:   3'- gcaGCUUAGGuAgAGGCGUAGGcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.