miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 160536 0.67 0.996374
Target:  5'- gCGUCGAGUUCuUCUgguuggCCGCGUaCCGcAGCc -3'
miRNA:   3'- -GCAGCUUAGGuAGA------GGCGUA-GGC-UUG- -5'
15954 5' -51.4 NC_004065.1 + 148056 0.69 0.985854
Target:  5'- aCGUCGAcgacaucaucAUCCAgaUCUCCuGCGUCUGuuucGGCg -3'
miRNA:   3'- -GCAGCU----------UAGGU--AGAGG-CGUAGGC----UUG- -5'
15954 5' -51.4 NC_004065.1 + 146192 0.68 0.991417
Target:  5'- cCGUgGGcgCCAaguUCUCCGUcUCCGAc- -3'
miRNA:   3'- -GCAgCUuaGGU---AGAGGCGuAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 143099 0.79 0.614138
Target:  5'- aCGUgGggUCCAUCUUCGCGgcgCCGGGa -3'
miRNA:   3'- -GCAgCuuAGGUAGAGGCGUa--GGCUUg -5'
15954 5' -51.4 NC_004065.1 + 139932 0.66 0.997658
Target:  5'- gGUUGAAcUUCGUCUCCGUcgacaggaugaaguAUCuCGGGCa -3'
miRNA:   3'- gCAGCUU-AGGUAGAGGCG--------------UAG-GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 131809 0.67 0.993457
Target:  5'- uGUUGGAUCUcgUUCUG-GUCCGGGCu -3'
miRNA:   3'- gCAGCUUAGGuaGAGGCgUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 129616 0.67 0.995089
Target:  5'- uCGUgCGGAUCaugaugCUCCGCAUCUgcggucugGAACa -3'
miRNA:   3'- -GCA-GCUUAGgua---GAGGCGUAGG--------CUUG- -5'
15954 5' -51.4 NC_004065.1 + 126585 0.67 0.996374
Target:  5'- -cUCGggUCCG-CUggagCUGCcgCCGAACa -3'
miRNA:   3'- gcAGCuuAGGUaGA----GGCGuaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 124484 0.7 0.975447
Target:  5'- gCGcCGggUCCAgggccgcgcggaUCUCCaGCAUCUGcGCg -3'
miRNA:   3'- -GCaGCuuAGGU------------AGAGG-CGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 123502 0.68 0.991417
Target:  5'- gGUCGAcacgaaCGUCUgCGgGUCCGGGCu -3'
miRNA:   3'- gCAGCUuag---GUAGAgGCgUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 123214 0.66 0.9984
Target:  5'- gCGUCGAccuaacgGUCCGUa--CGCAaCUGAACg -3'
miRNA:   3'- -GCAGCU-------UAGGUAgagGCGUaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 123002 0.67 0.99432
Target:  5'- gGUCGuggguGUCgGUCUCCGgcgagcgugaCGUCCGAcgGCg -3'
miRNA:   3'- gCAGCu----UAGgUAGAGGC----------GUAGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 122795 0.67 0.995771
Target:  5'- gGUgaGAGU-CAUCUCgCGCAUCCGcGCu -3'
miRNA:   3'- gCAg-CUUAgGUAGAG-GCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 120800 0.66 0.997368
Target:  5'- --cCGccgCCGUCUcCCGUcgCCGAGCa -3'
miRNA:   3'- gcaGCuuaGGUAGA-GGCGuaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 119595 0.66 0.997368
Target:  5'- --cCGAGUCUGUUUCCGCggCUGGGa -3'
miRNA:   3'- gcaGCUUAGGUAGAGGCGuaGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 117959 0.67 0.993457
Target:  5'- gCGUC---UUCGUCUCUGCGguuaCCGAACu -3'
miRNA:   3'- -GCAGcuuAGGUAGAGGCGUa---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 117457 0.66 0.996904
Target:  5'- gCGUCG--UCCggCUCCGCggCCGcuCg -3'
miRNA:   3'- -GCAGCuuAGGuaGAGGCGuaGGCuuG- -5'
15954 5' -51.4 NC_004065.1 + 116109 0.66 0.997773
Target:  5'- uCGUCGAcacgcgCgAUCUCCGCccucucGUCCGGc- -3'
miRNA:   3'- -GCAGCUua----GgUAGAGGCG------UAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 112869 0.66 0.997368
Target:  5'- cCGUCGGcgCUGUCggugCCGUucaccGUCCuGAGCg -3'
miRNA:   3'- -GCAGCUuaGGUAGa---GGCG-----UAGG-CUUG- -5'
15954 5' -51.4 NC_004065.1 + 111767 0.71 0.948658
Target:  5'- aCGUCGAGgcgCCGgcgagCUCCacGCGUCCGucGACg -3'
miRNA:   3'- -GCAGCUUa--GGUa----GAGG--CGUAGGC--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.