miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 9407 0.68 0.992492
Target:  5'- aCGUaGA--CCGUUUCCGCGUCCGuuuCa -3'
miRNA:   3'- -GCAgCUuaGGUAGAGGCGUAGGCuu-G- -5'
15954 5' -51.4 NC_004065.1 + 52370 0.68 0.987451
Target:  5'- uGUCccccGUCCGUCUCCGguUCCa--- -3'
miRNA:   3'- gCAGcu--UAGGUAGAGGCguAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 18771 0.68 0.988905
Target:  5'- --aCGAgacGUUCGUCUUgGCGUCCGAGg -3'
miRNA:   3'- gcaGCU---UAGGUAGAGgCGUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 31128 0.68 0.988905
Target:  5'- cCGUCa---CCGUCUCCGUcUCCGAc- -3'
miRNA:   3'- -GCAGcuuaGGUAGAGGCGuAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 172230 0.68 0.990224
Target:  5'- cCGUCGggUCC-UC-CCGUca-CGAACg -3'
miRNA:   3'- -GCAGCuuAGGuAGaGGCGuagGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 146192 0.68 0.991417
Target:  5'- cCGUgGGcgCCAaguUCUCCGUcUCCGAc- -3'
miRNA:   3'- -GCAgCUuaGGU---AGAGGCGuAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 123502 0.68 0.991417
Target:  5'- gGUCGAcacgaaCGUCUgCGgGUCCGGGCu -3'
miRNA:   3'- gCAGCUuag---GUAGAgGCgUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 27084 0.68 0.992492
Target:  5'- uGUCGcGUCC-UCUCCcCAggaccCCGAACg -3'
miRNA:   3'- gCAGCuUAGGuAGAGGcGUa----GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 198202 0.68 0.992492
Target:  5'- gGUCGGc-CCugaaCUCCGCGUCCGGc- -3'
miRNA:   3'- gCAGCUuaGGua--GAGGCGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 43751 0.68 0.987451
Target:  5'- gGUUucAUCCG-CUCCGUGUCCGGGa -3'
miRNA:   3'- gCAGcuUAGGUaGAGGCGUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 86778 0.69 0.985855
Target:  5'- cCG-CGggUCCAUCUCC-CAccccCCGGAUu -3'
miRNA:   3'- -GCaGCuuAGGUAGAGGcGUa---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 41029 0.69 0.984107
Target:  5'- cCGU-GAGUCCGUCgaagCCGCAgagCuCGGGCc -3'
miRNA:   3'- -GCAgCUUAGGUAGa---GGCGUa--G-GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 174691 0.77 0.725284
Target:  5'- cCGUCGggUCCGUgUCCGUuUCCGccGCu -3'
miRNA:   3'- -GCAGCuuAGGUAgAGGCGuAGGCu-UG- -5'
15954 5' -51.4 NC_004065.1 + 211369 0.77 0.744802
Target:  5'- gCGUCGAucacaCCAcauucucCUCCGUAUCCGAGCa -3'
miRNA:   3'- -GCAGCUua---GGUa------GAGGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 101639 0.73 0.880996
Target:  5'- gGUCGAAUCCGggcacCUCUGgGUCUGAAg -3'
miRNA:   3'- gCAGCUUAGGUa----GAGGCgUAGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 111767 0.71 0.948658
Target:  5'- aCGUCGAGgcgCCGgcgagCUCCacGCGUCCGucGACg -3'
miRNA:   3'- -GCAGCUUa--GGUa----GAGG--CGUAGGC--UUG- -5'
15954 5' -51.4 NC_004065.1 + 100404 0.71 0.956657
Target:  5'- cCGgCGggUCCAguUCUCCGCG-CUGAccGCg -3'
miRNA:   3'- -GCaGCuuAGGU--AGAGGCGUaGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 124484 0.7 0.975447
Target:  5'- gCGcCGggUCCAgggccgcgcggaUCUCCaGCAUCUGcGCg -3'
miRNA:   3'- -GCaGCuuAGGU------------AGAGG-CGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 23724 0.7 0.975447
Target:  5'- aGUCGcGGUCCGUCcggUCCGUccgAUCCGAu- -3'
miRNA:   3'- gCAGC-UUAGGUAG---AGGCG---UAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 106511 0.69 0.977168
Target:  5'- aGUCGAAUCCGgcacgcaguuagccUCgUCCGaCAUCugCGAACg -3'
miRNA:   3'- gCAGCUUAGGU--------------AG-AGGC-GUAG--GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.