miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 62166 0.8 0.583656
Target:  5'- uGUCGGAUCCAucacuaacUCUCCGCucUCCGAuaACa -3'
miRNA:   3'- gCAGCUUAGGU--------AGAGGCGu-AGGCU--UG- -5'
15954 5' -51.4 NC_004065.1 + 84708 0.68 0.990224
Target:  5'- uGUCGAGUgUcgCUCgGCAcCCGAAg -3'
miRNA:   3'- gCAGCUUAgGuaGAGgCGUaGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 197078 0.67 0.995089
Target:  5'- aCGUCGAcgCCcgCaUCCGCGcgggagCCGAc- -3'
miRNA:   3'- -GCAGCUuaGGuaG-AGGCGUa-----GGCUug -5'
15954 5' -51.4 NC_004065.1 + 60038 0.66 0.998428
Target:  5'- -cUCGAGcCCGUCaCCGUccccgaAUCCGAACc -3'
miRNA:   3'- gcAGCUUaGGUAGaGGCG------UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 55599 0.73 0.901066
Target:  5'- aCGUaCGAGUCCGUgaCCGCGUCCc--- -3'
miRNA:   3'- -GCA-GCUUAGGUAgaGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 91471 0.71 0.948234
Target:  5'- cCGUCGccgucAGUCCGccgccgcUCgugCCGCGUUCGAGCg -3'
miRNA:   3'- -GCAGC-----UUAGGU-------AGa--GGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 29918 0.7 0.96699
Target:  5'- gCGgacCGAcgCCGUCUUCGUcagaGUCUGAGCa -3'
miRNA:   3'- -GCa--GCUuaGGUAGAGGCG----UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 23487 0.7 0.97001
Target:  5'- aCGcCGAGUCCga-UUCGCGUCCGcGCu -3'
miRNA:   3'- -GCaGCUUAGGuagAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 64367 0.69 0.983923
Target:  5'- -cUCGGAUCgCGUC-CUGCAggcucugUCCGAGCa -3'
miRNA:   3'- gcAGCUUAG-GUAGaGGCGU-------AGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 223966 0.68 0.988905
Target:  5'- aGUCGAAUgguacaCCGUCUgugagcaaCGUGUCCGGACc -3'
miRNA:   3'- gCAGCUUA------GGUAGAg-------GCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 148056 0.69 0.985854
Target:  5'- aCGUCGAcgacaucaucAUCCAgaUCUCCuGCGUCUGuuucGGCg -3'
miRNA:   3'- -GCAGCU----------UAGGU--AGAGG-CGUAGGC----UUG- -5'
15954 5' -51.4 NC_004065.1 + 31032 0.69 0.977878
Target:  5'- aCGgCGAAcgCCAUCUCCGCGUacaagCGggUg -3'
miRNA:   3'- -GCaGCUUa-GGUAGAGGCGUAg----GCuuG- -5'
15954 5' -51.4 NC_004065.1 + 143099 0.79 0.614138
Target:  5'- aCGUgGggUCCAUCUUCGCGgcgCCGGGa -3'
miRNA:   3'- -GCAgCuuAGGUAGAGGCGUa--GGCUUg -5'
15954 5' -51.4 NC_004065.1 + 90818 0.68 0.987451
Target:  5'- gGUCacGUUCGUCgCCGCAUCCcGACa -3'
miRNA:   3'- gCAGcuUAGGUAGaGGCGUAGGcUUG- -5'
15954 5' -51.4 NC_004065.1 + 188324 0.77 0.705447
Target:  5'- uGUUGAuggCCGUCUCCGCGUCCcucGCg -3'
miRNA:   3'- gCAGCUua-GGUAGAGGCGUAGGcu-UG- -5'
15954 5' -51.4 NC_004065.1 + 175485 0.69 0.977878
Target:  5'- aCG-CGGAgagaacuccaucUCCAUCUCCGUAUCCu--- -3'
miRNA:   3'- -GCaGCUU------------AGGUAGAGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 167367 0.68 0.987451
Target:  5'- gGUCGccgcugCCGUCUCCGCcgCCa--- -3'
miRNA:   3'- gCAGCuua---GGUAGAGGCGuaGGcuug -5'
15954 5' -51.4 NC_004065.1 + 205167 0.68 0.992492
Target:  5'- cCGUCGAGgccgCCGUCgCCGCcaacaUCGGGCg -3'
miRNA:   3'- -GCAGCUUa---GGUAGaGGCGua---GGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 90399 0.74 0.873861
Target:  5'- uCGUCGAcacgCCAccgCUCCGCAUCUGcGCc -3'
miRNA:   3'- -GCAGCUua--GGUa--GAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 172746 0.7 0.963762
Target:  5'- ---aGAAUCCGUCUUCacgGCGUCCGAu- -3'
miRNA:   3'- gcagCUUAGGUAGAGG---CGUAGGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.