miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 5' -51.4 NC_004065.1 + 148056 0.69 0.985854
Target:  5'- aCGUCGAcgacaucaucAUCCAgaUCUCCuGCGUCUGuuucGGCg -3'
miRNA:   3'- -GCAGCU----------UAGGU--AGAGG-CGUAGGC----UUG- -5'
15954 5' -51.4 NC_004065.1 + 172746 0.7 0.963762
Target:  5'- ---aGAAUCCGUCUUCacgGCGUCCGAu- -3'
miRNA:   3'- gcagCUUAGGUAGAGG---CGUAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 123214 0.66 0.9984
Target:  5'- gCGUCGAccuaacgGUCCGUa--CGCAaCUGAACg -3'
miRNA:   3'- -GCAGCU-------UAGGUAgagGCGUaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 120800 0.66 0.997368
Target:  5'- --cCGccgCCGUCUcCCGUcgCCGAGCa -3'
miRNA:   3'- gcaGCuuaGGUAGA-GGCGuaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 197078 0.67 0.995089
Target:  5'- aCGUCGAcgCCcgCaUCCGCGcgggagCCGAc- -3'
miRNA:   3'- -GCAGCUuaGGuaG-AGGCGUa-----GGCUug -5'
15954 5' -51.4 NC_004065.1 + 91471 0.71 0.948234
Target:  5'- cCGUCGccgucAGUCCGccgccgcUCgugCCGCGUUCGAGCg -3'
miRNA:   3'- -GCAGC-----UUAGGU-------AGa--GGCGUAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 112869 0.66 0.997368
Target:  5'- cCGUCGGcgCUGUCggugCCGUucaccGUCCuGAGCg -3'
miRNA:   3'- -GCAGCUuaGGUAGa---GGCG-----UAGG-CUUG- -5'
15954 5' -51.4 NC_004065.1 + 55599 0.73 0.901066
Target:  5'- aCGUaCGAGUCCGUgaCCGCGUCCc--- -3'
miRNA:   3'- -GCA-GCUUAGGUAgaGGCGUAGGcuug -5'
15954 5' -51.4 NC_004065.1 + 90399 0.74 0.873861
Target:  5'- uCGUCGAcacgCCAccgCUCCGCAUCUGcGCc -3'
miRNA:   3'- -GCAGCUua--GGUa--GAGGCGUAGGCuUG- -5'
15954 5' -51.4 NC_004065.1 + 184171 0.67 0.995707
Target:  5'- cCGUCGGAgcggCCAUCgcgucCCGUgcggccgGUCCGAuACa -3'
miRNA:   3'- -GCAGCUUa---GGUAGa----GGCG-------UAGGCU-UG- -5'
15954 5' -51.4 NC_004065.1 + 205928 0.66 0.998092
Target:  5'- aCGUCGGcgCCAUggacgucCUCgGCAUCaucauCGAGCc -3'
miRNA:   3'- -GCAGCUuaGGUA-------GAGgCGUAG-----GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 31032 0.69 0.977878
Target:  5'- aCGgCGAAcgCCAUCUCCGCGUacaagCGggUg -3'
miRNA:   3'- -GCaGCUUa-GGUAGAGGCGUAg----GCuuG- -5'
15954 5' -51.4 NC_004065.1 + 29918 0.7 0.96699
Target:  5'- gCGgacCGAcgCCGUCUUCGUcagaGUCUGAGCa -3'
miRNA:   3'- -GCa--GCUuaGGUAGAGGCG----UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 126585 0.67 0.996374
Target:  5'- -cUCGggUCCG-CUggagCUGCcgCCGAACa -3'
miRNA:   3'- gcAGCuuAGGUaGA----GGCGuaGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 139932 0.66 0.997658
Target:  5'- gGUUGAAcUUCGUCUCCGUcgacaggaugaaguAUCuCGGGCa -3'
miRNA:   3'- gCAGCUU-AGGUAGAGGCG--------------UAG-GCUUG- -5'
15954 5' -51.4 NC_004065.1 + 60038 0.66 0.998428
Target:  5'- -cUCGAGcCCGUCaCCGUccccgaAUCCGAACc -3'
miRNA:   3'- gcAGCUUaGGUAGaGGCG------UAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 31128 0.68 0.988905
Target:  5'- cCGUCa---CCGUCUCCGUcUCCGAc- -3'
miRNA:   3'- -GCAGcuuaGGUAGAGGCGuAGGCUug -5'
15954 5' -51.4 NC_004065.1 + 119595 0.66 0.997368
Target:  5'- --cCGAGUCUGUUUCCGCggCUGGGa -3'
miRNA:   3'- gcaGCUUAGGUAGAGGCGuaGGCUUg -5'
15954 5' -51.4 NC_004065.1 + 93375 0.67 0.996374
Target:  5'- cCGUCGcucgccaccagGAUCCAcg-CCGC-UCCGGACc -3'
miRNA:   3'- -GCAGC-----------UUAGGUagaGGCGuAGGCUUG- -5'
15954 5' -51.4 NC_004065.1 + 117457 0.66 0.996904
Target:  5'- gCGUCG--UCCggCUCCGCggCCGcuCg -3'
miRNA:   3'- -GCAGCuuAGGuaGAGGCGuaGGCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.