miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 116460 0.66 0.99993
Target:  5'- gCGGCCUucUCGAcgauccCCAGAAA---GGCGGGc -3'
miRNA:   3'- -GCUGGA--AGCU------GGUUUUUuagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 32664 0.66 0.99993
Target:  5'- aCGGCCcgCGG-CGGAGAAUCGGCc-- -3'
miRNA:   3'- -GCUGGaaGCUgGUUUUUUAGCCGccu -5'
15956 3' -48.9 NC_004065.1 + 68491 0.66 0.99993
Target:  5'- aCGGCCgagcaGGCuCAGGugaggCGGCGGAc -3'
miRNA:   3'- -GCUGGaag--CUG-GUUUuuua-GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 131397 0.66 0.99993
Target:  5'- gCGACCgagCGcACCGAAGg--CGGCGa- -3'
miRNA:   3'- -GCUGGaa-GC-UGGUUUUuuaGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 129878 0.66 0.999926
Target:  5'- uCGACCUgu-GCCGcgcgcugCGGCGGAc -3'
miRNA:   3'- -GCUGGAagcUGGUuuuuua-GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 135534 0.66 0.999909
Target:  5'- uCGACCgUCGACgucGAcGUCGGaCGGGc -3'
miRNA:   3'- -GCUGGaAGCUGguuUUuUAGCC-GCCU- -5'
15956 3' -48.9 NC_004065.1 + 80038 0.66 0.999909
Target:  5'- aGAUCg--GACUGGAGGAcUCGGUGGAg -3'
miRNA:   3'- gCUGGaagCUGGUUUUUU-AGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 183756 0.66 0.999909
Target:  5'- aCGGCC-UCGACCAG---GUCGaaCGGGu -3'
miRNA:   3'- -GCUGGaAGCUGGUUuuuUAGCc-GCCU- -5'
15956 3' -48.9 NC_004065.1 + 168485 0.66 0.999909
Target:  5'- uCGGCCUUCuACCGcGAcugcGAUCGccuGCGGGa -3'
miRNA:   3'- -GCUGGAAGcUGGUuUU----UUAGC---CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 120441 0.66 0.999909
Target:  5'- gCGGCCUgauaCGccGCCAGGAGAcaGGCGGc -3'
miRNA:   3'- -GCUGGAa---GC--UGGUUUUUUagCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 76203 0.66 0.999909
Target:  5'- aGAUacUCGACCGGAuagacgauAUCGGUGGu -3'
miRNA:   3'- gCUGgaAGCUGGUUUuu------UAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 222544 0.66 0.999882
Target:  5'- uCGAgCCggUUGACauccaCAAGAAGUCGGUGGu -3'
miRNA:   3'- -GCU-GGa-AGCUG-----GUUUUUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 109212 0.66 0.999882
Target:  5'- uCGGCCUcuuccugcUCGGCgaCGGGAGA-CGGCGGc -3'
miRNA:   3'- -GCUGGA--------AGCUG--GUUUUUUaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 99094 0.66 0.999879
Target:  5'- -uGCCgUCGACCAacAAGAGUCucuuccuGGCGGc -3'
miRNA:   3'- gcUGGaAGCUGGU--UUUUUAG-------CCGCCu -5'
15956 3' -48.9 NC_004065.1 + 153489 0.66 0.999879
Target:  5'- uGACCaUCG-CCAAGAGucagggcAUCGGUcuGGAg -3'
miRNA:   3'- gCUGGaAGCuGGUUUUU-------UAGCCG--CCU- -5'
15956 3' -48.9 NC_004065.1 + 103072 0.66 0.999848
Target:  5'- gCGAUCUUCGGCacguacugCAAcAAGAUCGaGUGGGu -3'
miRNA:   3'- -GCUGGAAGCUG--------GUU-UUUUAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 134532 0.66 0.999848
Target:  5'- uCGACCgu-GAUCAAAGucAGUCGGaGGAa -3'
miRNA:   3'- -GCUGGaagCUGGUUUU--UUAGCCgCCU- -5'
15956 3' -48.9 NC_004065.1 + 138401 0.66 0.999848
Target:  5'- uGACCgUCGACCGcGAcuUCuGCGGc -3'
miRNA:   3'- gCUGGaAGCUGGUuUUuuAGcCGCCu -5'
15956 3' -48.9 NC_004065.1 + 206819 0.66 0.999848
Target:  5'- -cGCCUgcugCGAauUCGGgcGGGAUCGGCGGGg -3'
miRNA:   3'- gcUGGAa---GCU--GGUU--UUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162676 0.66 0.999806
Target:  5'- uCGACCgcgCGuCCGGAGcgccauucGAcCGGCGGGu -3'
miRNA:   3'- -GCUGGaa-GCuGGUUUU--------UUaGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.