Results 21 - 40 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 129878 | 0.66 | 0.999926 |
Target: 5'- uCGACCUgu-GCCGcgcgcugCGGCGGAc -3' miRNA: 3'- -GCUGGAagcUGGUuuuuua-GCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 68491 | 0.66 | 0.99993 |
Target: 5'- aCGGCCgagcaGGCuCAGGugaggCGGCGGAc -3' miRNA: 3'- -GCUGGaag--CUG-GUUUuuua-GCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 168485 | 0.66 | 0.999909 |
Target: 5'- uCGGCCUUCuACCGcGAcugcGAUCGccuGCGGGa -3' miRNA: 3'- -GCUGGAAGcUGGUuUU----UUAGC---CGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 76203 | 0.66 | 0.999909 |
Target: 5'- aGAUacUCGACCGGAuagacgauAUCGGUGGu -3' miRNA: 3'- gCUGgaAGCUGGUUUuu------UAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 135534 | 0.66 | 0.999909 |
Target: 5'- uCGACCgUCGACgucGAcGUCGGaCGGGc -3' miRNA: 3'- -GCUGGaAGCUGguuUUuUAGCC-GCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 222544 | 0.66 | 0.999882 |
Target: 5'- uCGAgCCggUUGACauccaCAAGAAGUCGGUGGu -3' miRNA: 3'- -GCU-GGa-AGCUG-----GUUUUUUAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 116460 | 0.66 | 0.99993 |
Target: 5'- gCGGCCUucUCGAcgauccCCAGAAA---GGCGGGc -3' miRNA: 3'- -GCUGGA--AGCU------GGUUUUUuagCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 35187 | 0.67 | 0.999613 |
Target: 5'- -cGCCguggUCGGCCugGAGAAcgUGGCGGc -3' miRNA: 3'- gcUGGa---AGCUGG--UUUUUuaGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 176652 | 0.67 | 0.999754 |
Target: 5'- aCGAUCUcugucuguaGAUCAAG--GUCGGCGGGu -3' miRNA: 3'- -GCUGGAag-------CUGGUUUuuUAGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 151372 | 0.67 | 0.99973 |
Target: 5'- cCGGCCgcugcgcuggCGGCCGAucucuugggUGGCGGAg -3' miRNA: 3'- -GCUGGaa--------GCUGGUUuuuua----GCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 28886 | 0.67 | 0.999691 |
Target: 5'- gGACUgcuggCGcCCc--GAGUCGGCGGAc -3' miRNA: 3'- gCUGGaa---GCuGGuuuUUUAGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 153699 | 0.67 | 0.999691 |
Target: 5'- cCGACCUgauuuCCAAcacg-CGGCGGAu -3' miRNA: 3'- -GCUGGAagcu-GGUUuuuuaGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 21433 | 0.67 | 0.999691 |
Target: 5'- -aGCUUUCGAUaacuGAuuGUCGGCGGu -3' miRNA: 3'- gcUGGAAGCUGgu--UUuuUAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 90105 | 0.67 | 0.999754 |
Target: 5'- cCGuCCguucgUCGACCGAccccUCGGgGGAu -3' miRNA: 3'- -GCuGGa----AGCUGGUUuuuuAGCCgCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 114005 | 0.67 | 0.999776 |
Target: 5'- aGACCcgUCGGCagaGAGcugcccccgcggcgcAcGUCGGCGGAc -3' miRNA: 3'- gCUGGa-AGCUGg--UUU---------------UuUAGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 7317 | 0.67 | 0.999392 |
Target: 5'- uGACgaUCGAgCCGGugguaccGGAcgCGGCGGAg -3' miRNA: 3'- gCUGgaAGCU-GGUU-------UUUuaGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 115740 | 0.67 | 0.999638 |
Target: 5'- cCGACUgagguagacgcagUCGGCCGGGAAgcggaggcggcaggGUUGGCGGu -3' miRNA: 3'- -GCUGGa------------AGCUGGUUUUU--------------UAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 68780 | 0.67 | 0.999404 |
Target: 5'- gCGGCCUUCaaGGCCGugucGGAGAaCGuGCGGGc -3' miRNA: 3'- -GCUGGAAG--CUGGU----UUUUUaGC-CGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 167336 | 0.67 | 0.999404 |
Target: 5'- aCGACCUgCGugCGGAAcg-CGGCGc- -3' miRNA: 3'- -GCUGGAaGCugGUUUUuuaGCCGCcu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 38208 | 0.67 | 0.999404 |
Target: 5'- uGACCccCGugCGGAGGAcgGGCGGGg -3' miRNA: 3'- gCUGGaaGCugGUUUUUUagCCGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home