miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 152829 0.68 0.99842
Target:  5'- aCGACCUguccuacgUCGAUCGAG--GUCGGCa-- -3'
miRNA:   3'- -GCUGGA--------AGCUGGUUUuuUAGCCGccu -5'
15956 3' -48.9 NC_004065.1 + 168467 0.68 0.99842
Target:  5'- aGAUCUUCGuCCc----GUCGGUGGGg -3'
miRNA:   3'- gCUGGAAGCuGGuuuuuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 85791 0.68 0.998686
Target:  5'- gCGACCga-GGCgCGAGAAccggcGUCGGCGaGAg -3'
miRNA:   3'- -GCUGGaagCUG-GUUUUU-----UAGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 41714 0.68 0.999105
Target:  5'- aCGGCCaucaacacggUGAUCAuccuGAUCGGCGGGc -3'
miRNA:   3'- -GCUGGaa--------GCUGGUuuu-UUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 184841 0.68 0.999253
Target:  5'- -uGCUgggUUCGGCCGAGGGAUCgagucgagcgggcGGCGGGa -3'
miRNA:   3'- gcUGG---AAGCUGGUUUUUUAG-------------CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168845 0.68 0.999268
Target:  5'- uGGCCUaCG-CCGGGu--UCGGCGGu -3'
miRNA:   3'- gCUGGAaGCuGGUUUuuuAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 142319 0.68 0.999105
Target:  5'- uCGAUCgUCGACCGcGAGGUcucgaacgcCGGCGGc -3'
miRNA:   3'- -GCUGGaAGCUGGUuUUUUA---------GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 163157 0.68 0.999268
Target:  5'- gCGGCUcgUCGuCCG---GAUCGGCGGc -3'
miRNA:   3'- -GCUGGa-AGCuGGUuuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 9110 0.69 0.996859
Target:  5'- -cACCUUCGACCAcAAGAUC-GCGa- -3'
miRNA:   3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5'
15956 3' -48.9 NC_004065.1 + 58998 0.69 0.997336
Target:  5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3'
miRNA:   3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 221212 0.69 0.997336
Target:  5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162564 0.69 0.997336
Target:  5'- uCGAUC-UCGugCAu---GUCGGCGGu -3'
miRNA:   3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 120374 0.69 0.997751
Target:  5'- uGACgUUCGcucuCCGGcgGAUCGgGCGGAc -3'
miRNA:   3'- gCUGgAAGCu---GGUUuuUUAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 167339 0.69 0.997336
Target:  5'- aGACCg-CGACCAAcg---CGGCGGc -3'
miRNA:   3'- gCUGGaaGCUGGUUuuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 68529 0.69 0.996313
Target:  5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3'
miRNA:   3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 165372 0.69 0.996313
Target:  5'- aGAUC-UCGGCCAGca---CGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 68265 0.69 0.996859
Target:  5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3'
miRNA:   3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5'
15956 3' -48.9 NC_004065.1 + 166333 0.69 0.99811
Target:  5'- aCGGCCcgcuucUUCGugCGGGAGAgucUCGGCGaGGu -3'
miRNA:   3'- -GCUGG------AAGCugGUUUUUU---AGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 142636 0.69 0.99811
Target:  5'- aGGCCgcUCGAUCAAc----CGGCGGAu -3'
miRNA:   3'- gCUGGa-AGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 81683 0.69 0.99811
Target:  5'- gGACCgggUGACCAAGGA--CGGCGa- -3'
miRNA:   3'- gCUGGaa-GCUGGUUUUUuaGCCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.