Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 77025 | 0.7 | 0.994195 |
Target: 5'- gCGACC-UCGACuCGGAGcuggcgcgGAUCGGCGa- -3' miRNA: 3'- -GCUGGaAGCUG-GUUUU--------UUAGCCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 71025 | 0.7 | 0.993303 |
Target: 5'- -aGCUggaGGCCAAGAGagugGUCGGCGGGg -3' miRNA: 3'- gcUGGaagCUGGUUUUU----UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 64160 | 0.7 | 0.992717 |
Target: 5'- cCGACCUggucUCGgaguuacgcaaguauACCGAGAAGUCgcaggcggcgGGCGGAg -3' miRNA: 3'- -GCUGGA----AGC---------------UGGUUUUUUAG----------CCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 27680 | 0.7 | 0.992304 |
Target: 5'- cCGGCCUggaGGCCGGAGgcucuGAUCcgcccGGCGGAc -3' miRNA: 3'- -GCUGGAag-CUGGUUUU-----UUAG-----CCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 112644 | 0.7 | 0.994195 |
Target: 5'- gCGGCCgagcgUCGauaugGCCGAGGAAUuuaacuuccugaCGGCGGAc -3' miRNA: 3'- -GCUGGa----AGC-----UGGUUUUUUA------------GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 28545 | 0.7 | 0.994989 |
Target: 5'- gGGCCgucgggUCGACCGGGAucUCGcGgGGAg -3' miRNA: 3'- gCUGGa-----AGCUGGUUUUuuAGC-CgCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 165614 | 0.7 | 0.994989 |
Target: 5'- gCGACCagcuucUCGACCGucuuuAGGUCGGCGu- -3' miRNA: 3'- -GCUGGa-----AGCUGGUuu---UUUAGCCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 117063 | 0.7 | 0.994195 |
Target: 5'- gCGaACgUUCGGCCGcggcgcuGUCGGUGGAg -3' miRNA: 3'- -GC-UGgAAGCUGGUuuuu---UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 221212 | 0.69 | 0.997336 |
Target: 5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3' miRNA: 3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 120374 | 0.69 | 0.997751 |
Target: 5'- uGACgUUCGcucuCCGGcgGAUCGgGCGGAc -3' miRNA: 3'- gCUGgAAGCu---GGUUuuUUAGC-CGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 162564 | 0.69 | 0.997336 |
Target: 5'- uCGAUC-UCGugCAu---GUCGGCGGu -3' miRNA: 3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 167339 | 0.69 | 0.997336 |
Target: 5'- aGACCg-CGACCAAcg---CGGCGGc -3' miRNA: 3'- gCUGGaaGCUGGUUuuuuaGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 9110 | 0.69 | 0.996859 |
Target: 5'- -cACCUUCGACCAcAAGAUC-GCGa- -3' miRNA: 3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 68529 | 0.69 | 0.996313 |
Target: 5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3' miRNA: 3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 121454 | 0.69 | 0.996313 |
Target: 5'- uCGACaCUUCGACgAccAGGUCGGuCGGc -3' miRNA: 3'- -GCUG-GAAGCUGgUuuUUUAGCC-GCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 165372 | 0.69 | 0.996313 |
Target: 5'- aGAUC-UCGGCCAGca---CGGCGGAc -3' miRNA: 3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 142636 | 0.69 | 0.99811 |
Target: 5'- aGGCCgcUCGAUCAAc----CGGCGGAu -3' miRNA: 3'- gCUGGa-AGCUGGUUuuuuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 68265 | 0.69 | 0.996859 |
Target: 5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3' miRNA: 3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 81683 | 0.69 | 0.99811 |
Target: 5'- gGACCgggUGACCAAGGA--CGGCGa- -3' miRNA: 3'- gCUGGaa-GCUGGUUUUUuaGCCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 58998 | 0.69 | 0.997336 |
Target: 5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3' miRNA: 3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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