Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 26846 | 1.1 | 0.019842 |
Target: 5'- uCGACCUUCGACCAAAAAAUCGGCGGAg -3' miRNA: 3'- -GCUGGAAGCUGGUUUUUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 148852 | 0.79 | 0.784257 |
Target: 5'- gCGGCCgccgCGAUCGAGGAGgcggCGGCGGGg -3' miRNA: 3'- -GCUGGaa--GCUGGUUUUUUa---GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 67454 | 0.76 | 0.897206 |
Target: 5'- gGACCUgUCGGCCGAGg---CGGCGGu -3' miRNA: 3'- gCUGGA-AGCUGGUUUuuuaGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 197896 | 0.76 | 0.903674 |
Target: 5'- aGugC-UCGGCCAugcAAUCGGCGGGc -3' miRNA: 3'- gCugGaAGCUGGUuuuUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 71106 | 0.75 | 0.921632 |
Target: 5'- uGGCCUUCG-CCGAAGAucuggagaagcuGUCGGCGcGGu -3' miRNA: 3'- gCUGGAAGCuGGUUUUU------------UAGCCGC-CU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 200293 | 0.75 | 0.932383 |
Target: 5'- -aGCUcUCGACCu---GAUCGGCGGAa -3' miRNA: 3'- gcUGGaAGCUGGuuuuUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 8526 | 0.75 | 0.937392 |
Target: 5'- uGGCUUUCGACCGGcucGAA-CGGUGGAu -3' miRNA: 3'- gCUGGAAGCUGGUUu--UUUaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 110717 | 0.73 | 0.965773 |
Target: 5'- gCGAC--UCGGCCGAGuauuuuauGGAUUGGCGGAc -3' miRNA: 3'- -GCUGgaAGCUGGUUU--------UUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 145929 | 0.73 | 0.971853 |
Target: 5'- gGugUcgCGACCAGAAAcggaCGGCGGAg -3' miRNA: 3'- gCugGaaGCUGGUUUUUua--GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 119594 | 0.72 | 0.977114 |
Target: 5'- uGGCCUggaCGugCAGGAcgccggCGGCGGAg -3' miRNA: 3'- gCUGGAa--GCugGUUUUuua---GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 69311 | 0.72 | 0.977114 |
Target: 5'- cCGACCgaCGACaCAGAGcaucguguucGUCGGCGGGa -3' miRNA: 3'- -GCUGGaaGCUG-GUUUUu---------UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 94705 | 0.72 | 0.979454 |
Target: 5'- uGACCUuggagggcggcUCGAgCGGgccGAAGUCGGCGGc -3' miRNA: 3'- gCUGGA-----------AGCUgGUU---UUUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 42211 | 0.72 | 0.981613 |
Target: 5'- aGugUUUUGAUCugaaaggaGAGGGAUCGGCGGGg -3' miRNA: 3'- gCugGAAGCUGG--------UUUUUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 9401 | 0.71 | 0.985414 |
Target: 5'- uCGACggUCGACCGGAcggcauagugcaAGAUaCGGUGGAg -3' miRNA: 3'- -GCUGgaAGCUGGUUU------------UUUA-GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 218963 | 0.71 | 0.985414 |
Target: 5'- uCGACCcauaaACCAGAuAAUCGGCGGu -3' miRNA: 3'- -GCUGGaagc-UGGUUUuUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 168968 | 0.71 | 0.988583 |
Target: 5'- aCGGCCUcUCGGuguCCGucAGcgCGGCGGAc -3' miRNA: 3'- -GCUGGA-AGCU---GGUuuUUuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 120688 | 0.71 | 0.988583 |
Target: 5'- aGAUggucUCGACCAGcuccccgcgGAAAUCGGUGGAg -3' miRNA: 3'- gCUGga--AGCUGGUU---------UUUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 59754 | 0.71 | 0.989952 |
Target: 5'- cCGACCgcgUGGCCGAugguggCGGCGGc -3' miRNA: 3'- -GCUGGaa-GCUGGUUuuuua-GCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 50863 | 0.71 | 0.99119 |
Target: 5'- gGGCCUcUGACgGAGAGAUCGaCGGGc -3' miRNA: 3'- gCUGGAaGCUGgUUUUUUAGCcGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 27680 | 0.7 | 0.992304 |
Target: 5'- cCGGCCUggaGGCCGGAGgcucuGAUCcgcccGGCGGAc -3' miRNA: 3'- -GCUGGAag-CUGGUUUU-----UUAG-----CCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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