miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 64160 0.7 0.992717
Target:  5'- cCGACCUggucUCGgaguuacgcaaguauACCGAGAAGUCgcaggcggcgGGCGGAg -3'
miRNA:   3'- -GCUGGA----AGC---------------UGGUUUUUUAG----------CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 71025 0.7 0.993303
Target:  5'- -aGCUggaGGCCAAGAGagugGUCGGCGGGg -3'
miRNA:   3'- gcUGGaagCUGGUUUUU----UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 77025 0.7 0.994195
Target:  5'- gCGACC-UCGACuCGGAGcuggcgcgGAUCGGCGa- -3'
miRNA:   3'- -GCUGGaAGCUG-GUUUU--------UUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 112644 0.7 0.994195
Target:  5'- gCGGCCgagcgUCGauaugGCCGAGGAAUuuaacuuccugaCGGCGGAc -3'
miRNA:   3'- -GCUGGa----AGC-----UGGUUUUUUA------------GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 117063 0.7 0.994195
Target:  5'- gCGaACgUUCGGCCGcggcgcuGUCGGUGGAg -3'
miRNA:   3'- -GC-UGgAAGCUGGUuuuu---UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 165614 0.7 0.994989
Target:  5'- gCGACCagcuucUCGACCGucuuuAGGUCGGCGu- -3'
miRNA:   3'- -GCUGGa-----AGCUGGUuu---UUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 28545 0.7 0.994989
Target:  5'- gGGCCgucgggUCGACCGGGAucUCGcGgGGAg -3'
miRNA:   3'- gCUGGa-----AGCUGGUUUUuuAGC-CgCCU- -5'
15956 3' -48.9 NC_004065.1 + 173551 0.7 0.995693
Target:  5'- cCGuAUCUUCGGCgGGGAGGUCGGUcGAu -3'
miRNA:   3'- -GC-UGGAAGCUGgUUUUUUAGCCGcCU- -5'
15956 3' -48.9 NC_004065.1 + 121454 0.69 0.996313
Target:  5'- uCGACaCUUCGACgAccAGGUCGGuCGGc -3'
miRNA:   3'- -GCUG-GAAGCUGgUuuUUUAGCC-GCCu -5'
15956 3' -48.9 NC_004065.1 + 68529 0.69 0.996313
Target:  5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3'
miRNA:   3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 165372 0.69 0.996313
Target:  5'- aGAUC-UCGGCCAGca---CGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 9110 0.69 0.996859
Target:  5'- -cACCUUCGACCAcAAGAUC-GCGa- -3'
miRNA:   3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5'
15956 3' -48.9 NC_004065.1 + 68265 0.69 0.996859
Target:  5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3'
miRNA:   3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5'
15956 3' -48.9 NC_004065.1 + 162564 0.69 0.997336
Target:  5'- uCGAUC-UCGugCAu---GUCGGCGGu -3'
miRNA:   3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 58998 0.69 0.997336
Target:  5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3'
miRNA:   3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 167339 0.69 0.997336
Target:  5'- aGACCg-CGACCAAcg---CGGCGGc -3'
miRNA:   3'- gCUGGaaGCUGGUUuuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 221212 0.69 0.997336
Target:  5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 120374 0.69 0.997751
Target:  5'- uGACgUUCGcucuCCGGcgGAUCGgGCGGAc -3'
miRNA:   3'- gCUGgAAGCu---GGUUuuUUAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 81683 0.69 0.99811
Target:  5'- gGACCgggUGACCAAGGA--CGGCGa- -3'
miRNA:   3'- gCUGGaa-GCUGGUUUUUuaGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 142636 0.69 0.99811
Target:  5'- aGGCCgcUCGAUCAAc----CGGCGGAu -3'
miRNA:   3'- gCUGGa-AGCUGGUUuuuuaGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.