Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 166333 | 0.69 | 0.99811 |
Target: 5'- aCGGCCcgcuucUUCGugCGGGAGAgucUCGGCGaGGu -3' miRNA: 3'- -GCUGG------AAGCugGUUUUUU---AGCCGC-CU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 162917 | 0.68 | 0.998391 |
Target: 5'- aGACCUUCGuuCGGAccauggccgcgccAGAUCGacGCGGAu -3' miRNA: 3'- gCUGGAAGCugGUUU-------------UUUAGC--CGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 168467 | 0.68 | 0.99842 |
Target: 5'- aGAUCUUCGuCCc----GUCGGUGGGg -3' miRNA: 3'- gCUGGAAGCuGGuuuuuUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 77994 | 0.68 | 0.99842 |
Target: 5'- uGACCUcggCGugCGAGAugaagaGGCGGGu -3' miRNA: 3'- gCUGGAa--GCugGUUUUuuag--CCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 152829 | 0.68 | 0.99842 |
Target: 5'- aCGACCUguccuacgUCGAUCGAG--GUCGGCa-- -3' miRNA: 3'- -GCUGGA--------AGCUGGUUUuuUAGCCGccu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 168610 | 0.68 | 0.99842 |
Target: 5'- gGGCCUcuacUCGACCGucgucaugauGGAUCGcuGCGGAa -3' miRNA: 3'- gCUGGA----AGCUGGUuu--------UUUAGC--CGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 68089 | 0.68 | 0.99842 |
Target: 5'- gGACaagaCGACgGAcGAGUCGGCGGu -3' miRNA: 3'- gCUGgaa-GCUGgUUuUUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 72489 | 0.68 | 0.99842 |
Target: 5'- gCGGCUgaaGACCGGGGAGaaGGUGGAa -3' miRNA: 3'- -GCUGGaagCUGGUUUUUUagCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 158231 | 0.68 | 0.99842 |
Target: 5'- aGAUCUcCGACCAGAAcGUCugcagaguGGCGGc -3' miRNA: 3'- gCUGGAaGCUGGUUUUuUAG--------CCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 203138 | 0.68 | 0.99842 |
Target: 5'- gCGGCCUcUgGACCGGccgg-CGGUGGAa -3' miRNA: 3'- -GCUGGA-AgCUGGUUuuuuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 43516 | 0.68 | 0.99842 |
Target: 5'- gGACUcggCGGCCAGGAagagucGAUCGGCGu- -3' miRNA: 3'- gCUGGaa-GCUGGUUUU------UUAGCCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 85791 | 0.68 | 0.998686 |
Target: 5'- gCGACCga-GGCgCGAGAAccggcGUCGGCGaGAg -3' miRNA: 3'- -GCUGGaagCUG-GUUUUU-----UAGCCGC-CU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 146592 | 0.68 | 0.998913 |
Target: 5'- gGAUCggggUGGCCAucGGGGccGUCGGCGGGg -3' miRNA: 3'- gCUGGaa--GCUGGU--UUUU--UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 34591 | 0.68 | 0.998913 |
Target: 5'- gGACCUgucCGACgaCGGcGAcgCGGCGGGa -3' miRNA: 3'- gCUGGAa--GCUG--GUUuUUuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 32271 | 0.68 | 0.998913 |
Target: 5'- aGACCUacuggGACCGccuGGAGUCGGCGa- -3' miRNA: 3'- gCUGGAag---CUGGUu--UUUUAGCCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 8744 | 0.68 | 0.999105 |
Target: 5'- aCGACCggaGGCCGugguggCGGCGGc -3' miRNA: 3'- -GCUGGaagCUGGUuuuuuaGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 99447 | 0.68 | 0.999105 |
Target: 5'- aCGuCCUUCGGCCAGAugcccgGAGUCuuGGaccaGGAg -3' miRNA: 3'- -GCuGGAAGCUGGUUU------UUUAG--CCg---CCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 142319 | 0.68 | 0.999105 |
Target: 5'- uCGAUCgUCGACCGcGAGGUcucgaacgcCGGCGGc -3' miRNA: 3'- -GCUGGaAGCUGGUuUUUUA---------GCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 30754 | 0.68 | 0.999105 |
Target: 5'- aGGCUgcccUCGGaauCCGAG--GUCGGCGGAc -3' miRNA: 3'- gCUGGa---AGCU---GGUUUuuUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 41714 | 0.68 | 0.999105 |
Target: 5'- aCGGCCaucaacacggUGAUCAuccuGAUCGGCGGGc -3' miRNA: 3'- -GCUGGaa--------GCUGGUuuu-UUAGCCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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