miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 125586 0.66 0.999806
Target:  5'- uCGugCUUCGccucguugGCCGu--GcgCGGCGGGu -3'
miRNA:   3'- -GCugGAAGC--------UGGUuuuUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162676 0.66 0.999806
Target:  5'- uCGACCgcgCGuCCGGAGcgccauucGAcCGGCGGGu -3'
miRNA:   3'- -GCUGGaa-GCuGGUUUU--------UUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 193753 0.66 0.999806
Target:  5'- uCGGCuCUgcCGACCGAGAGAUgaUGGCGa- -3'
miRNA:   3'- -GCUG-GAa-GCUGGUUUUUUA--GCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 40676 0.66 0.999806
Target:  5'- aCGACaacuaccUGACCAccAAGUUGGUGGAg -3'
miRNA:   3'- -GCUGgaa----GCUGGUuuUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 83751 0.66 0.999806
Target:  5'- aGACgaa-GGCCAGGAAcUCGcGCGGAa -3'
miRNA:   3'- gCUGgaagCUGGUUUUUuAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 1901 0.66 0.999792
Target:  5'- aGACgUUCG-CCAAGAucuuggauacgcagGAgCGGCGGGc -3'
miRNA:   3'- gCUGgAAGCuGGUUUU--------------UUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 104107 0.66 0.999787
Target:  5'- uCGGCCUgcacgugccgagCGGCCGGGccuacagcaCGGCGGAg -3'
miRNA:   3'- -GCUGGAa-----------GCUGGUUUuuua-----GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 114005 0.67 0.999776
Target:  5'- aGACCcgUCGGCagaGAGcugcccccgcggcgcAcGUCGGCGGAc -3'
miRNA:   3'- gCUGGa-AGCUGg--UUU---------------UuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 90105 0.67 0.999754
Target:  5'- cCGuCCguucgUCGACCGAccccUCGGgGGAu -3'
miRNA:   3'- -GCuGGa----AGCUGGUUuuuuAGCCgCCU- -5'
15956 3' -48.9 NC_004065.1 + 176652 0.67 0.999754
Target:  5'- aCGAUCUcugucuguaGAUCAAG--GUCGGCGGGu -3'
miRNA:   3'- -GCUGGAag-------CUGGUUUuuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 151372 0.67 0.99973
Target:  5'- cCGGCCgcugcgcuggCGGCCGAucucuugggUGGCGGAg -3'
miRNA:   3'- -GCUGGaa--------GCUGGUUuuuua----GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 211341 0.67 0.999691
Target:  5'- aGGCCUgagcCGACCGA------GGCGGAc -3'
miRNA:   3'- gCUGGAa---GCUGGUUuuuuagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 28886 0.67 0.999691
Target:  5'- gGACUgcuggCGcCCc--GAGUCGGCGGAc -3'
miRNA:   3'- gCUGGaa---GCuGGuuuUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 153699 0.67 0.999691
Target:  5'- cCGACCUgauuuCCAAcacg-CGGCGGAu -3'
miRNA:   3'- -GCUGGAagcu-GGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 21433 0.67 0.999691
Target:  5'- -aGCUUUCGAUaacuGAuuGUCGGCGGu -3'
miRNA:   3'- gcUGGAAGCUGgu--UUuuUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 115740 0.67 0.999638
Target:  5'- cCGACUgagguagacgcagUCGGCCGGGAAgcggaggcggcaggGUUGGCGGu -3'
miRNA:   3'- -GCUGGa------------AGCUGGUUUUU--------------UAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 47794 0.67 0.999613
Target:  5'- uCGAUCUccUCgGGCCAGagGAGAUCGGUGa- -3'
miRNA:   3'- -GCUGGA--AG-CUGGUU--UUUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 35187 0.67 0.999613
Target:  5'- -cGCCguggUCGGCCugGAGAAcgUGGCGGc -3'
miRNA:   3'- gcUGGa---AGCUGG--UUUUUuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 43136 0.67 0.999558
Target:  5'- aGACCgcCGGCCGcgGAAgacacgcgcacggaCGGCGGGa -3'
miRNA:   3'- gCUGGaaGCUGGUuuUUUa-------------GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 38208 0.67 0.999404
Target:  5'- uGACCccCGugCGGAGGAcgGGCGGGg -3'
miRNA:   3'- gCUGGaaGCugGUUUUUUagCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.