miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 167336 0.67 0.999404
Target:  5'- aCGACCUgCGugCGGAAcg-CGGCGc- -3'
miRNA:   3'- -GCUGGAaGCugGUUUUuuaGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 68780 0.67 0.999404
Target:  5'- gCGGCCUUCaaGGCCGugucGGAGAaCGuGCGGGc -3'
miRNA:   3'- -GCUGGAAG--CUGGU----UUUUUaGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 7317 0.67 0.999392
Target:  5'- uGACgaUCGAgCCGGugguaccGGAcgCGGCGGAg -3'
miRNA:   3'- gCUGgaAGCU-GGUU-------UUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 163157 0.68 0.999268
Target:  5'- gCGGCUcgUCGuCCG---GAUCGGCGGc -3'
miRNA:   3'- -GCUGGa-AGCuGGUuuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 198350 0.68 0.999268
Target:  5'- aCGcACCUUCGcuugggaccGCCGGGugGUCGGCGu- -3'
miRNA:   3'- -GC-UGGAAGC---------UGGUUUuuUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 130052 0.68 0.999268
Target:  5'- aCGACCcgCGGCCcGAGcacgccgCGGCGGu -3'
miRNA:   3'- -GCUGGaaGCUGGuUUUuua----GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 168845 0.68 0.999268
Target:  5'- uGGCCUaCG-CCGGGu--UCGGCGGu -3'
miRNA:   3'- gCUGGAaGCuGGUUUuuuAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 184841 0.68 0.999253
Target:  5'- -uGCUgggUUCGGCCGAGGGAUCgagucgagcgggcGGCGGGa -3'
miRNA:   3'- gcUGG---AAGCUGGUUUUUUAG-------------CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 99447 0.68 0.999105
Target:  5'- aCGuCCUUCGGCCAGAugcccgGAGUCuuGGaccaGGAg -3'
miRNA:   3'- -GCuGGAAGCUGGUUU------UUUAG--CCg---CCU- -5'
15956 3' -48.9 NC_004065.1 + 30754 0.68 0.999105
Target:  5'- aGGCUgcccUCGGaauCCGAG--GUCGGCGGAc -3'
miRNA:   3'- gCUGGa---AGCU---GGUUUuuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 8744 0.68 0.999105
Target:  5'- aCGACCggaGGCCGugguggCGGCGGc -3'
miRNA:   3'- -GCUGGaagCUGGUuuuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 172245 0.68 0.999105
Target:  5'- uCGACCgacUGACCAccGAGAGcgaCGGCGGc -3'
miRNA:   3'- -GCUGGaa-GCUGGU--UUUUUa--GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 142319 0.68 0.999105
Target:  5'- uCGAUCgUCGACCGcGAGGUcucgaacgcCGGCGGc -3'
miRNA:   3'- -GCUGGaAGCUGGUuUUUUA---------GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 41714 0.68 0.999105
Target:  5'- aCGGCCaucaacacggUGAUCAuccuGAUCGGCGGGc -3'
miRNA:   3'- -GCUGGaa--------GCUGGUuuu-UUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 34591 0.68 0.998913
Target:  5'- gGACCUgucCGACgaCGGcGAcgCGGCGGGa -3'
miRNA:   3'- gCUGGAa--GCUG--GUUuUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 146592 0.68 0.998913
Target:  5'- gGAUCggggUGGCCAucGGGGccGUCGGCGGGg -3'
miRNA:   3'- gCUGGaa--GCUGGU--UUUU--UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 32271 0.68 0.998913
Target:  5'- aGACCUacuggGACCGccuGGAGUCGGCGa- -3'
miRNA:   3'- gCUGGAag---CUGGUu--UUUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 85791 0.68 0.998686
Target:  5'- gCGACCga-GGCgCGAGAAccggcGUCGGCGaGAg -3'
miRNA:   3'- -GCUGGaagCUG-GUUUUU-----UAGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 168610 0.68 0.99842
Target:  5'- gGGCCUcuacUCGACCGucgucaugauGGAUCGcuGCGGAa -3'
miRNA:   3'- gCUGGA----AGCUGGUuu--------UUUAGC--CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 158231 0.68 0.99842
Target:  5'- aGAUCUcCGACCAGAAcGUCugcagaguGGCGGc -3'
miRNA:   3'- gCUGGAaGCUGGUUUUuUAG--------CCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.