Results 61 - 80 of 109 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 77994 | 0.68 | 0.99842 |
Target: 5'- uGACCUcggCGugCGAGAugaagaGGCGGGu -3' miRNA: 3'- gCUGGAa--GCugGUUUUuuag--CCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 43516 | 0.68 | 0.99842 |
Target: 5'- gGACUcggCGGCCAGGAagagucGAUCGGCGu- -3' miRNA: 3'- gCUGGaa-GCUGGUUUU------UUAGCCGCcu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 203138 | 0.68 | 0.99842 |
Target: 5'- gCGGCCUcUgGACCGGccgg-CGGUGGAa -3' miRNA: 3'- -GCUGGA-AgCUGGUUuuuuaGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 152829 | 0.68 | 0.99842 |
Target: 5'- aCGACCUguccuacgUCGAUCGAG--GUCGGCa-- -3' miRNA: 3'- -GCUGGA--------AGCUGGUUUuuUAGCCGccu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 68089 | 0.68 | 0.99842 |
Target: 5'- gGACaagaCGACgGAcGAGUCGGCGGu -3' miRNA: 3'- gCUGgaa-GCUGgUUuUUUAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 72489 | 0.68 | 0.99842 |
Target: 5'- gCGGCUgaaGACCGGGGAGaaGGUGGAa -3' miRNA: 3'- -GCUGGaagCUGGUUUUUUagCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 168467 | 0.68 | 0.99842 |
Target: 5'- aGAUCUUCGuCCc----GUCGGUGGGg -3' miRNA: 3'- gCUGGAAGCuGGuuuuuUAGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 162917 | 0.68 | 0.998391 |
Target: 5'- aGACCUUCGuuCGGAccauggccgcgccAGAUCGacGCGGAu -3' miRNA: 3'- gCUGGAAGCugGUUU-------------UUUAGC--CGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 166333 | 0.69 | 0.99811 |
Target: 5'- aCGGCCcgcuucUUCGugCGGGAGAgucUCGGCGaGGu -3' miRNA: 3'- -GCUGG------AAGCugGUUUUUU---AGCCGC-CU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 142636 | 0.69 | 0.99811 |
Target: 5'- aGGCCgcUCGAUCAAc----CGGCGGAu -3' miRNA: 3'- gCUGGa-AGCUGGUUuuuuaGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 81683 | 0.69 | 0.99811 |
Target: 5'- gGACCgggUGACCAAGGA--CGGCGa- -3' miRNA: 3'- gCUGGaa-GCUGGUUUUUuaGCCGCcu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 120374 | 0.69 | 0.997751 |
Target: 5'- uGACgUUCGcucuCCGGcgGAUCGgGCGGAc -3' miRNA: 3'- gCUGgAAGCu---GGUUuuUUAGC-CGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 58998 | 0.69 | 0.997336 |
Target: 5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3' miRNA: 3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 167339 | 0.69 | 0.997336 |
Target: 5'- aGACCg-CGACCAAcg---CGGCGGc -3' miRNA: 3'- gCUGGaaGCUGGUUuuuuaGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 162564 | 0.69 | 0.997336 |
Target: 5'- uCGAUC-UCGugCAu---GUCGGCGGu -3' miRNA: 3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 221212 | 0.69 | 0.997336 |
Target: 5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3' miRNA: 3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 68265 | 0.69 | 0.996859 |
Target: 5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3' miRNA: 3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 9110 | 0.69 | 0.996859 |
Target: 5'- -cACCUUCGACCAcAAGAUC-GCGa- -3' miRNA: 3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 121454 | 0.69 | 0.996313 |
Target: 5'- uCGACaCUUCGACgAccAGGUCGGuCGGc -3' miRNA: 3'- -GCUG-GAAGCUGgUuuUUUAGCC-GCCu -5' |
|||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 68529 | 0.69 | 0.996313 |
Target: 5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3' miRNA: 3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home