miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 1901 0.66 0.999792
Target:  5'- aGACgUUCG-CCAAGAucuuggauacgcagGAgCGGCGGGc -3'
miRNA:   3'- gCUGgAAGCuGGUUUU--------------UUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 7317 0.67 0.999392
Target:  5'- uGACgaUCGAgCCGGugguaccGGAcgCGGCGGAg -3'
miRNA:   3'- gCUGgaAGCU-GGUU-------UUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 8526 0.75 0.937392
Target:  5'- uGGCUUUCGACCGGcucGAA-CGGUGGAu -3'
miRNA:   3'- gCUGGAAGCUGGUUu--UUUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 8744 0.68 0.999105
Target:  5'- aCGACCggaGGCCGugguggCGGCGGc -3'
miRNA:   3'- -GCUGGaagCUGGUuuuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 9110 0.69 0.996859
Target:  5'- -cACCUUCGACCAcAAGAUC-GCGa- -3'
miRNA:   3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5'
15956 3' -48.9 NC_004065.1 + 9401 0.71 0.985414
Target:  5'- uCGACggUCGACCGGAcggcauagugcaAGAUaCGGUGGAg -3'
miRNA:   3'- -GCUGgaAGCUGGUUU------------UUUA-GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 21433 0.67 0.999691
Target:  5'- -aGCUUUCGAUaacuGAuuGUCGGCGGu -3'
miRNA:   3'- gcUGGAAGCUGgu--UUuuUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 26846 1.1 0.019842
Target:  5'- uCGACCUUCGACCAAAAAAUCGGCGGAg -3'
miRNA:   3'- -GCUGGAAGCUGGUUUUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 27680 0.7 0.992304
Target:  5'- cCGGCCUggaGGCCGGAGgcucuGAUCcgcccGGCGGAc -3'
miRNA:   3'- -GCUGGAag-CUGGUUUU-----UUAG-----CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 28545 0.7 0.994989
Target:  5'- gGGCCgucgggUCGACCGGGAucUCGcGgGGAg -3'
miRNA:   3'- gCUGGa-----AGCUGGUUUUuuAGC-CgCCU- -5'
15956 3' -48.9 NC_004065.1 + 28886 0.67 0.999691
Target:  5'- gGACUgcuggCGcCCc--GAGUCGGCGGAc -3'
miRNA:   3'- gCUGGaa---GCuGGuuuUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 30754 0.68 0.999105
Target:  5'- aGGCUgcccUCGGaauCCGAG--GUCGGCGGAc -3'
miRNA:   3'- gCUGGa---AGCU---GGUUUuuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 32271 0.68 0.998913
Target:  5'- aGACCUacuggGACCGccuGGAGUCGGCGa- -3'
miRNA:   3'- gCUGGAag---CUGGUu--UUUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 32664 0.66 0.99993
Target:  5'- aCGGCCcgCGG-CGGAGAAUCGGCc-- -3'
miRNA:   3'- -GCUGGaaGCUgGUUUUUUAGCCGccu -5'
15956 3' -48.9 NC_004065.1 + 34090 0.66 0.999806
Target:  5'- uGAgCUg-GACCAGGuGAUCGGCGa- -3'
miRNA:   3'- gCUgGAagCUGGUUUuUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 34591 0.68 0.998913
Target:  5'- gGACCUgucCGACgaCGGcGAcgCGGCGGGa -3'
miRNA:   3'- gCUGGAa--GCUG--GUUuUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 35187 0.67 0.999613
Target:  5'- -cGCCguggUCGGCCugGAGAAcgUGGCGGc -3'
miRNA:   3'- gcUGGa---AGCUGG--UUUUUuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 38208 0.67 0.999404
Target:  5'- uGACCccCGugCGGAGGAcgGGCGGGg -3'
miRNA:   3'- gCUGGaaGCugGUUUUUUagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 40676 0.66 0.999806
Target:  5'- aCGACaacuaccUGACCAccAAGUUGGUGGAg -3'
miRNA:   3'- -GCUGgaa----GCUGGUuuUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 41714 0.68 0.999105
Target:  5'- aCGGCCaucaacacggUGAUCAuccuGAUCGGCGGGc -3'
miRNA:   3'- -GCUGGaa--------GCUGGUuuu-UUAGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.