miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 42211 0.72 0.981613
Target:  5'- aGugUUUUGAUCugaaaggaGAGGGAUCGGCGGGg -3'
miRNA:   3'- gCugGAAGCUGG--------UUUUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 43136 0.67 0.999558
Target:  5'- aGACCgcCGGCCGcgGAAgacacgcgcacggaCGGCGGGa -3'
miRNA:   3'- gCUGGaaGCUGGUuuUUUa-------------GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 43516 0.68 0.99842
Target:  5'- gGACUcggCGGCCAGGAagagucGAUCGGCGu- -3'
miRNA:   3'- gCUGGaa-GCUGGUUUU------UUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 47794 0.67 0.999613
Target:  5'- uCGAUCUccUCgGGCCAGagGAGAUCGGUGa- -3'
miRNA:   3'- -GCUGGA--AG-CUGGUU--UUUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 50863 0.71 0.99119
Target:  5'- gGGCCUcUGACgGAGAGAUCGaCGGGc -3'
miRNA:   3'- gCUGGAaGCUGgUUUUUUAGCcGCCU- -5'
15956 3' -48.9 NC_004065.1 + 58998 0.69 0.997336
Target:  5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3'
miRNA:   3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 59754 0.71 0.989952
Target:  5'- cCGACCgcgUGGCCGAugguggCGGCGGc -3'
miRNA:   3'- -GCUGGaa-GCUGGUUuuuua-GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 64160 0.7 0.992717
Target:  5'- cCGACCUggucUCGgaguuacgcaaguauACCGAGAAGUCgcaggcggcgGGCGGAg -3'
miRNA:   3'- -GCUGGA----AGC---------------UGGUUUUUUAG----------CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 67454 0.76 0.897206
Target:  5'- gGACCUgUCGGCCGAGg---CGGCGGu -3'
miRNA:   3'- gCUGGA-AGCUGGUUUuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 68089 0.68 0.99842
Target:  5'- gGACaagaCGACgGAcGAGUCGGCGGu -3'
miRNA:   3'- gCUGgaa-GCUGgUUuUUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 68265 0.69 0.996859
Target:  5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3'
miRNA:   3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5'
15956 3' -48.9 NC_004065.1 + 68491 0.66 0.99993
Target:  5'- aCGGCCgagcaGGCuCAGGugaggCGGCGGAc -3'
miRNA:   3'- -GCUGGaag--CUG-GUUUuuua-GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 68529 0.69 0.996313
Target:  5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3'
miRNA:   3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 68780 0.67 0.999404
Target:  5'- gCGGCCUUCaaGGCCGugucGGAGAaCGuGCGGGc -3'
miRNA:   3'- -GCUGGAAG--CUGGU----UUUUUaGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 69311 0.72 0.977114
Target:  5'- cCGACCgaCGACaCAGAGcaucguguucGUCGGCGGGa -3'
miRNA:   3'- -GCUGGaaGCUG-GUUUUu---------UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 71025 0.7 0.993303
Target:  5'- -aGCUggaGGCCAAGAGagugGUCGGCGGGg -3'
miRNA:   3'- gcUGGaagCUGGUUUUU----UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 71106 0.75 0.921632
Target:  5'- uGGCCUUCG-CCGAAGAucuggagaagcuGUCGGCGcGGu -3'
miRNA:   3'- gCUGGAAGCuGGUUUUU------------UAGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 72489 0.68 0.99842
Target:  5'- gCGGCUgaaGACCGGGGAGaaGGUGGAa -3'
miRNA:   3'- -GCUGGaagCUGGUUUUUUagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 76203 0.66 0.999909
Target:  5'- aGAUacUCGACCGGAuagacgauAUCGGUGGu -3'
miRNA:   3'- gCUGgaAGCUGGUUUuu------UAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 77025 0.7 0.994195
Target:  5'- gCGACC-UCGACuCGGAGcuggcgcgGAUCGGCGa- -3'
miRNA:   3'- -GCUGGaAGCUG-GUUUU--------UUAGCCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.