miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 77994 0.68 0.99842
Target:  5'- uGACCUcggCGugCGAGAugaagaGGCGGGu -3'
miRNA:   3'- gCUGGAa--GCugGUUUUuuag--CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 80038 0.66 0.999909
Target:  5'- aGAUCg--GACUGGAGGAcUCGGUGGAg -3'
miRNA:   3'- gCUGGaagCUGGUUUUUU-AGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 81683 0.69 0.99811
Target:  5'- gGACCgggUGACCAAGGA--CGGCGa- -3'
miRNA:   3'- gCUGGaa-GCUGGUUUUUuaGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 83751 0.66 0.999806
Target:  5'- aGACgaa-GGCCAGGAAcUCGcGCGGAa -3'
miRNA:   3'- gCUGgaagCUGGUUUUUuAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 85791 0.68 0.998686
Target:  5'- gCGACCga-GGCgCGAGAAccggcGUCGGCGaGAg -3'
miRNA:   3'- -GCUGGaagCUG-GUUUUU-----UAGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 90105 0.67 0.999754
Target:  5'- cCGuCCguucgUCGACCGAccccUCGGgGGAu -3'
miRNA:   3'- -GCuGGa----AGCUGGUUuuuuAGCCgCCU- -5'
15956 3' -48.9 NC_004065.1 + 94705 0.72 0.979454
Target:  5'- uGACCUuggagggcggcUCGAgCGGgccGAAGUCGGCGGc -3'
miRNA:   3'- gCUGGA-----------AGCUgGUU---UUUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 99094 0.66 0.999879
Target:  5'- -uGCCgUCGACCAacAAGAGUCucuuccuGGCGGc -3'
miRNA:   3'- gcUGGaAGCUGGU--UUUUUAG-------CCGCCu -5'
15956 3' -48.9 NC_004065.1 + 99447 0.68 0.999105
Target:  5'- aCGuCCUUCGGCCAGAugcccgGAGUCuuGGaccaGGAg -3'
miRNA:   3'- -GCuGGAAGCUGGUUU------UUUAG--CCg---CCU- -5'
15956 3' -48.9 NC_004065.1 + 103072 0.66 0.999848
Target:  5'- gCGAUCUUCGGCacguacugCAAcAAGAUCGaGUGGGu -3'
miRNA:   3'- -GCUGGAAGCUG--------GUU-UUUUAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 104107 0.66 0.999787
Target:  5'- uCGGCCUgcacgugccgagCGGCCGGGccuacagcaCGGCGGAg -3'
miRNA:   3'- -GCUGGAa-----------GCUGGUUUuuua-----GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 109212 0.66 0.999882
Target:  5'- uCGGCCUcuuccugcUCGGCgaCGGGAGA-CGGCGGc -3'
miRNA:   3'- -GCUGGA--------AGCUG--GUUUUUUaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 110717 0.73 0.965773
Target:  5'- gCGAC--UCGGCCGAGuauuuuauGGAUUGGCGGAc -3'
miRNA:   3'- -GCUGgaAGCUGGUUU--------UUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 112644 0.7 0.994195
Target:  5'- gCGGCCgagcgUCGauaugGCCGAGGAAUuuaacuuccugaCGGCGGAc -3'
miRNA:   3'- -GCUGGa----AGC-----UGGUUUUUUA------------GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 114005 0.67 0.999776
Target:  5'- aGACCcgUCGGCagaGAGcugcccccgcggcgcAcGUCGGCGGAc -3'
miRNA:   3'- gCUGGa-AGCUGg--UUU---------------UuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 115740 0.67 0.999638
Target:  5'- cCGACUgagguagacgcagUCGGCCGGGAAgcggaggcggcaggGUUGGCGGu -3'
miRNA:   3'- -GCUGGa------------AGCUGGUUUUU--------------UAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 116460 0.66 0.99993
Target:  5'- gCGGCCUucUCGAcgauccCCAGAAA---GGCGGGc -3'
miRNA:   3'- -GCUGGA--AGCU------GGUUUUUuagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 117063 0.7 0.994195
Target:  5'- gCGaACgUUCGGCCGcggcgcuGUCGGUGGAg -3'
miRNA:   3'- -GC-UGgAAGCUGGUuuuu---UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 119594 0.72 0.977114
Target:  5'- uGGCCUggaCGugCAGGAcgccggCGGCGGAg -3'
miRNA:   3'- gCUGGAa--GCugGUUUUuua---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 120374 0.69 0.997751
Target:  5'- uGACgUUCGcucuCCGGcgGAUCGgGCGGAc -3'
miRNA:   3'- gCUGgAAGCu---GGUUuuUUAGC-CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.