miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 222544 0.66 0.999882
Target:  5'- uCGAgCCggUUGACauccaCAAGAAGUCGGUGGu -3'
miRNA:   3'- -GCU-GGa-AGCUG-----GUUUUUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 221212 0.69 0.997336
Target:  5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 218963 0.71 0.985414
Target:  5'- uCGACCcauaaACCAGAuAAUCGGCGGu -3'
miRNA:   3'- -GCUGGaagc-UGGUUUuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 211341 0.67 0.999691
Target:  5'- aGGCCUgagcCGACCGA------GGCGGAc -3'
miRNA:   3'- gCUGGAa---GCUGGUUuuuuagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 206819 0.66 0.999848
Target:  5'- -cGCCUgcugCGAauUCGGgcGGGAUCGGCGGGg -3'
miRNA:   3'- gcUGGAa---GCU--GGUU--UUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 203138 0.68 0.99842
Target:  5'- gCGGCCUcUgGACCGGccgg-CGGUGGAa -3'
miRNA:   3'- -GCUGGA-AgCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 200293 0.75 0.932383
Target:  5'- -aGCUcUCGACCu---GAUCGGCGGAa -3'
miRNA:   3'- gcUGGaAGCUGGuuuuUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 198350 0.68 0.999268
Target:  5'- aCGcACCUUCGcuugggaccGCCGGGugGUCGGCGu- -3'
miRNA:   3'- -GC-UGGAAGC---------UGGUUUuuUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 197896 0.76 0.903674
Target:  5'- aGugC-UCGGCCAugcAAUCGGCGGGc -3'
miRNA:   3'- gCugGaAGCUGGUuuuUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 193753 0.66 0.999806
Target:  5'- uCGGCuCUgcCGACCGAGAGAUgaUGGCGa- -3'
miRNA:   3'- -GCUG-GAa-GCUGGUUUUUUA--GCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 184841 0.68 0.999253
Target:  5'- -uGCUgggUUCGGCCGAGGGAUCgagucgagcgggcGGCGGGa -3'
miRNA:   3'- gcUGG---AAGCUGGUUUUUUAG-------------CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 183756 0.66 0.999909
Target:  5'- aCGGCC-UCGACCAG---GUCGaaCGGGu -3'
miRNA:   3'- -GCUGGaAGCUGGUUuuuUAGCc-GCCU- -5'
15956 3' -48.9 NC_004065.1 + 176652 0.67 0.999754
Target:  5'- aCGAUCUcugucuguaGAUCAAG--GUCGGCGGGu -3'
miRNA:   3'- -GCUGGAag-------CUGGUUUuuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 173551 0.7 0.995693
Target:  5'- cCGuAUCUUCGGCgGGGAGGUCGGUcGAu -3'
miRNA:   3'- -GC-UGGAAGCUGgUUUUUUAGCCGcCU- -5'
15956 3' -48.9 NC_004065.1 + 172245 0.68 0.999105
Target:  5'- uCGACCgacUGACCAccGAGAGcgaCGGCGGc -3'
miRNA:   3'- -GCUGGaa-GCUGGU--UUUUUa--GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 168968 0.71 0.988583
Target:  5'- aCGGCCUcUCGGuguCCGucAGcgCGGCGGAc -3'
miRNA:   3'- -GCUGGA-AGCU---GGUuuUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168845 0.68 0.999268
Target:  5'- uGGCCUaCG-CCGGGu--UCGGCGGu -3'
miRNA:   3'- gCUGGAaGCuGGUUUuuuAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 168610 0.68 0.99842
Target:  5'- gGGCCUcuacUCGACCGucgucaugauGGAUCGcuGCGGAa -3'
miRNA:   3'- gCUGGA----AGCUGGUuu--------UUUAGC--CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168485 0.66 0.999909
Target:  5'- uCGGCCUUCuACCGcGAcugcGAUCGccuGCGGGa -3'
miRNA:   3'- -GCUGGAAGcUGGUuUU----UUAGC---CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168467 0.68 0.99842
Target:  5'- aGAUCUUCGuCCc----GUCGGUGGGg -3'
miRNA:   3'- gCUGGAAGCuGGuuuuuUAGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.