miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 167339 0.69 0.997336
Target:  5'- aGACCg-CGACCAAcg---CGGCGGc -3'
miRNA:   3'- gCUGGaaGCUGGUUuuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 167336 0.67 0.999404
Target:  5'- aCGACCUgCGugCGGAAcg-CGGCGc- -3'
miRNA:   3'- -GCUGGAaGCugGUUUUuuaGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 166333 0.69 0.99811
Target:  5'- aCGGCCcgcuucUUCGugCGGGAGAgucUCGGCGaGGu -3'
miRNA:   3'- -GCUGG------AAGCugGUUUUUU---AGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 165614 0.7 0.994989
Target:  5'- gCGACCagcuucUCGACCGucuuuAGGUCGGCGu- -3'
miRNA:   3'- -GCUGGa-----AGCUGGUuu---UUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 165372 0.69 0.996313
Target:  5'- aGAUC-UCGGCCAGca---CGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 163157 0.68 0.999268
Target:  5'- gCGGCUcgUCGuCCG---GAUCGGCGGc -3'
miRNA:   3'- -GCUGGa-AGCuGGUuuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 162917 0.68 0.998391
Target:  5'- aGACCUUCGuuCGGAccauggccgcgccAGAUCGacGCGGAu -3'
miRNA:   3'- gCUGGAAGCugGUUU-------------UUUAGC--CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162676 0.66 0.999806
Target:  5'- uCGACCgcgCGuCCGGAGcgccauucGAcCGGCGGGu -3'
miRNA:   3'- -GCUGGaa-GCuGGUUUU--------UUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162564 0.69 0.997336
Target:  5'- uCGAUC-UCGugCAu---GUCGGCGGu -3'
miRNA:   3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 158231 0.68 0.99842
Target:  5'- aGAUCUcCGACCAGAAcGUCugcagaguGGCGGc -3'
miRNA:   3'- gCUGGAaGCUGGUUUUuUAG--------CCGCCu -5'
15956 3' -48.9 NC_004065.1 + 153699 0.67 0.999691
Target:  5'- cCGACCUgauuuCCAAcacg-CGGCGGAu -3'
miRNA:   3'- -GCUGGAagcu-GGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 153489 0.66 0.999879
Target:  5'- uGACCaUCG-CCAAGAGucagggcAUCGGUcuGGAg -3'
miRNA:   3'- gCUGGaAGCuGGUUUUU-------UAGCCG--CCU- -5'
15956 3' -48.9 NC_004065.1 + 152829 0.68 0.99842
Target:  5'- aCGACCUguccuacgUCGAUCGAG--GUCGGCa-- -3'
miRNA:   3'- -GCUGGA--------AGCUGGUUUuuUAGCCGccu -5'
15956 3' -48.9 NC_004065.1 + 151372 0.67 0.99973
Target:  5'- cCGGCCgcugcgcuggCGGCCGAucucuugggUGGCGGAg -3'
miRNA:   3'- -GCUGGaa--------GCUGGUUuuuua----GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 148852 0.79 0.784257
Target:  5'- gCGGCCgccgCGAUCGAGGAGgcggCGGCGGGg -3'
miRNA:   3'- -GCUGGaa--GCUGGUUUUUUa---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 146592 0.68 0.998913
Target:  5'- gGAUCggggUGGCCAucGGGGccGUCGGCGGGg -3'
miRNA:   3'- gCUGGaa--GCUGGU--UUUU--UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 145929 0.73 0.971853
Target:  5'- gGugUcgCGACCAGAAAcggaCGGCGGAg -3'
miRNA:   3'- gCugGaaGCUGGUUUUUua--GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 142636 0.69 0.99811
Target:  5'- aGGCCgcUCGAUCAAc----CGGCGGAu -3'
miRNA:   3'- gCUGGa-AGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 142319 0.68 0.999105
Target:  5'- uCGAUCgUCGACCGcGAGGUcucgaacgcCGGCGGc -3'
miRNA:   3'- -GCUGGaAGCUGGUuUUUUA---------GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 138401 0.66 0.999848
Target:  5'- uGACCgUCGACCGcGAcuUCuGCGGc -3'
miRNA:   3'- gCUGGaAGCUGGUuUUuuAGcCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.