miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 152829 0.68 0.99842
Target:  5'- aCGACCUguccuacgUCGAUCGAG--GUCGGCa-- -3'
miRNA:   3'- -GCUGGA--------AGCUGGUUUuuUAGCCGccu -5'
15956 3' -48.9 NC_004065.1 + 9110 0.69 0.996859
Target:  5'- -cACCUUCGACCAcAAGAUC-GCGa- -3'
miRNA:   3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5'
15956 3' -48.9 NC_004065.1 + 58998 0.69 0.997336
Target:  5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3'
miRNA:   3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 221212 0.69 0.997336
Target:  5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162564 0.69 0.997336
Target:  5'- uCGAUC-UCGugCAu---GUCGGCGGu -3'
miRNA:   3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 120374 0.69 0.997751
Target:  5'- uGACgUUCGcucuCCGGcgGAUCGgGCGGAc -3'
miRNA:   3'- gCUGgAAGCu---GGUUuuUUAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 162917 0.68 0.998391
Target:  5'- aGACCUUCGuuCGGAccauggccgcgccAGAUCGacGCGGAu -3'
miRNA:   3'- gCUGGAAGCugGUUU-------------UUUAGC--CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 68089 0.68 0.99842
Target:  5'- gGACaagaCGACgGAcGAGUCGGCGGu -3'
miRNA:   3'- gCUGgaa-GCUGgUUuUUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 72489 0.68 0.99842
Target:  5'- gCGGCUgaaGACCGGGGAGaaGGUGGAa -3'
miRNA:   3'- -GCUGGaagCUGGUUUUUUagCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 121454 0.69 0.996313
Target:  5'- uCGACaCUUCGACgAccAGGUCGGuCGGc -3'
miRNA:   3'- -GCUG-GAAGCUGgUuuUUUAGCC-GCCu -5'
15956 3' -48.9 NC_004065.1 + 173551 0.7 0.995693
Target:  5'- cCGuAUCUUCGGCgGGGAGGUCGGUcGAu -3'
miRNA:   3'- -GC-UGGAAGCUGgUUUUUUAGCCGcCU- -5'
15956 3' -48.9 NC_004065.1 + 77025 0.7 0.994195
Target:  5'- gCGACC-UCGACuCGGAGcuggcgcgGAUCGGCGa- -3'
miRNA:   3'- -GCUGGaAGCUG-GUUUU--------UUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 67454 0.76 0.897206
Target:  5'- gGACCUgUCGGCCGAGg---CGGCGGu -3'
miRNA:   3'- gCUGGA-AGCUGGUUUuuuaGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 197896 0.76 0.903674
Target:  5'- aGugC-UCGGCCAugcAAUCGGCGGGc -3'
miRNA:   3'- gCugGaAGCUGGUuuuUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 71106 0.75 0.921632
Target:  5'- uGGCCUUCG-CCGAAGAucuggagaagcuGUCGGCGcGGu -3'
miRNA:   3'- gCUGGAAGCuGGUUUUU------------UAGCCGC-CU- -5'
15956 3' -48.9 NC_004065.1 + 200293 0.75 0.932383
Target:  5'- -aGCUcUCGACCu---GAUCGGCGGAa -3'
miRNA:   3'- gcUGGaAGCUGGuuuuUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 110717 0.73 0.965773
Target:  5'- gCGAC--UCGGCCGAGuauuuuauGGAUUGGCGGAc -3'
miRNA:   3'- -GCUGgaAGCUGGUUU--------UUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 50863 0.71 0.99119
Target:  5'- gGGCCUcUGACgGAGAGAUCGaCGGGc -3'
miRNA:   3'- gCUGGAaGCUGgUUUUUUAGCcGCCU- -5'
15956 3' -48.9 NC_004065.1 + 64160 0.7 0.992717
Target:  5'- cCGACCUggucUCGgaguuacgcaaguauACCGAGAAGUCgcaggcggcgGGCGGAg -3'
miRNA:   3'- -GCUGGA----AGC---------------UGGUUUUUUAG----------CCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 71025 0.7 0.993303
Target:  5'- -aGCUggaGGCCAAGAGagugGUCGGCGGGg -3'
miRNA:   3'- gcUGGaagCUGGUUUUU----UAGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.