Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 162564 | 0.69 | 0.997336 |
Target: 5'- uCGAUC-UCGugCAu---GUCGGCGGu -3' miRNA: 3'- -GCUGGaAGCugGUuuuuUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 221212 | 0.69 | 0.997336 |
Target: 5'- aGACCgUUGGuuGugguGAUCGGCGGAc -3' miRNA: 3'- gCUGGaAGCUggUuuu-UUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 58998 | 0.69 | 0.997336 |
Target: 5'- aCGACUUgaggcgaaaGGCCAG--GGUCGGCGGu -3' miRNA: 3'- -GCUGGAag-------CUGGUUuuUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 9110 | 0.69 | 0.996859 |
Target: 5'- -cACCUUCGACCAcAAGAUC-GCGa- -3' miRNA: 3'- gcUGGAAGCUGGUuUUUUAGcCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 120688 | 0.71 | 0.988583 |
Target: 5'- aGAUggucUCGACCAGcuccccgcgGAAAUCGGUGGAg -3' miRNA: 3'- gCUGga--AGCUGGUU---------UUUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 168968 | 0.71 | 0.988583 |
Target: 5'- aCGGCCUcUCGGuguCCGucAGcgCGGCGGAc -3' miRNA: 3'- -GCUGGA-AGCU---GGUuuUUuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 59754 | 0.71 | 0.989952 |
Target: 5'- cCGACCgcgUGGCCGAugguggCGGCGGc -3' miRNA: 3'- -GCUGGaa-GCUGGUUuuuua-GCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 27680 | 0.7 | 0.992304 |
Target: 5'- cCGGCCUggaGGCCGGAGgcucuGAUCcgcccGGCGGAc -3' miRNA: 3'- -GCUGGAag-CUGGUUUU-----UUAG-----CCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 112644 | 0.7 | 0.994195 |
Target: 5'- gCGGCCgagcgUCGauaugGCCGAGGAAUuuaacuuccugaCGGCGGAc -3' miRNA: 3'- -GCUGGa----AGC-----UGGUUUUUUA------------GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 117063 | 0.7 | 0.994195 |
Target: 5'- gCGaACgUUCGGCCGcggcgcuGUCGGUGGAg -3' miRNA: 3'- -GC-UGgAAGCUGGUuuuu---UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 28545 | 0.7 | 0.994989 |
Target: 5'- gGGCCgucgggUCGACCGGGAucUCGcGgGGAg -3' miRNA: 3'- gCUGGa-----AGCUGGUUUUuuAGC-CgCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 9401 | 0.71 | 0.985414 |
Target: 5'- uCGACggUCGACCGGAcggcauagugcaAGAUaCGGUGGAg -3' miRNA: 3'- -GCUGgaAGCUGGUUU------------UUUA-GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 218963 | 0.71 | 0.985414 |
Target: 5'- uCGACCcauaaACCAGAuAAUCGGCGGu -3' miRNA: 3'- -GCUGGaagc-UGGUUUuUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 42211 | 0.72 | 0.981613 |
Target: 5'- aGugUUUUGAUCugaaaggaGAGGGAUCGGCGGGg -3' miRNA: 3'- gCugGAAGCUGG--------UUUUUUAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 94705 | 0.72 | 0.979454 |
Target: 5'- uGACCUuggagggcggcUCGAgCGGgccGAAGUCGGCGGc -3' miRNA: 3'- gCUGGA-----------AGCUgGUU---UUUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 69311 | 0.72 | 0.977114 |
Target: 5'- cCGACCgaCGACaCAGAGcaucguguucGUCGGCGGGa -3' miRNA: 3'- -GCUGGaaGCUG-GUUUUu---------UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 119594 | 0.72 | 0.977114 |
Target: 5'- uGGCCUggaCGugCAGGAcgccggCGGCGGAg -3' miRNA: 3'- gCUGGAa--GCugGUUUUuua---GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 145929 | 0.73 | 0.971853 |
Target: 5'- gGugUcgCGACCAGAAAcggaCGGCGGAg -3' miRNA: 3'- gCugGaaGCUGGUUUUUua--GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 8526 | 0.75 | 0.937392 |
Target: 5'- uGGCUUUCGACCGGcucGAA-CGGUGGAu -3' miRNA: 3'- gCUGGAAGCUGGUUu--UUUaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 32664 | 0.66 | 0.99993 |
Target: 5'- aCGGCCcgCGG-CGGAGAAUCGGCc-- -3' miRNA: 3'- -GCUGGaaGCUgGUUUUUUAGCCGccu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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