miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 148852 0.79 0.784257
Target:  5'- gCGGCCgccgCGAUCGAGGAGgcggCGGCGGGg -3'
miRNA:   3'- -GCUGGaa--GCUGGUUUUUUa---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 68529 0.69 0.996313
Target:  5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3'
miRNA:   3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 68265 0.69 0.996859
Target:  5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3'
miRNA:   3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5'
15956 3' -48.9 NC_004065.1 + 32664 0.66 0.99993
Target:  5'- aCGGCCcgCGG-CGGAGAAUCGGCc-- -3'
miRNA:   3'- -GCUGGaaGCUgGUUUUUUAGCCGccu -5'
15956 3' -48.9 NC_004065.1 + 69311 0.72 0.977114
Target:  5'- cCGACCgaCGACaCAGAGcaucguguucGUCGGCGGGa -3'
miRNA:   3'- -GCUGGaaGCUG-GUUUUu---------UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 94705 0.72 0.979454
Target:  5'- uGACCUuggagggcggcUCGAgCGGgccGAAGUCGGCGGc -3'
miRNA:   3'- gCUGGA-----------AGCUgGUU---UUUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 218963 0.71 0.985414
Target:  5'- uCGACCcauaaACCAGAuAAUCGGCGGu -3'
miRNA:   3'- -GCUGGaagc-UGGUUUuUUAGCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 9401 0.71 0.985414
Target:  5'- uCGACggUCGACCGGAcggcauagugcaAGAUaCGGUGGAg -3'
miRNA:   3'- -GCUGgaAGCUGGUUU------------UUUA-GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 59754 0.71 0.989952
Target:  5'- cCGACCgcgUGGCCGAugguggCGGCGGc -3'
miRNA:   3'- -GCUGGaa-GCUGGUUuuuua-GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 165614 0.7 0.994989
Target:  5'- gCGACCagcuucUCGACCGucuuuAGGUCGGCGu- -3'
miRNA:   3'- -GCUGGa-----AGCUGGUuu---UUUAGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 112644 0.7 0.994195
Target:  5'- gCGGCCgagcgUCGauaugGCCGAGGAAUuuaacuuccugaCGGCGGAc -3'
miRNA:   3'- -GCUGGa----AGC-----UGGUUUUUUA------------GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168968 0.71 0.988583
Target:  5'- aCGGCCUcUCGGuguCCGucAGcgCGGCGGAc -3'
miRNA:   3'- -GCUGGA-AGCU---GGUuuUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 8526 0.75 0.937392
Target:  5'- uGGCUUUCGACCGGcucGAA-CGGUGGAu -3'
miRNA:   3'- gCUGGAAGCUGGUUu--UUUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 117063 0.7 0.994195
Target:  5'- gCGaACgUUCGGCCGcggcgcuGUCGGUGGAg -3'
miRNA:   3'- -GC-UGgAAGCUGGUuuuu---UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 145929 0.73 0.971853
Target:  5'- gGugUcgCGACCAGAAAcggaCGGCGGAg -3'
miRNA:   3'- gCugGaaGCUGGUUUUUua--GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 120688 0.71 0.988583
Target:  5'- aGAUggucUCGACCAGcuccccgcgGAAAUCGGUGGAg -3'
miRNA:   3'- gCUGga--AGCUGGUU---------UUUUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 28545 0.7 0.994989
Target:  5'- gGGCCgucgggUCGACCGGGAucUCGcGgGGAg -3'
miRNA:   3'- gCUGGa-----AGCUGGUUUUuuAGC-CgCCU- -5'
15956 3' -48.9 NC_004065.1 + 165372 0.69 0.996313
Target:  5'- aGAUC-UCGGCCAGca---CGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 119594 0.72 0.977114
Target:  5'- uGGCCUggaCGugCAGGAcgccggCGGCGGAg -3'
miRNA:   3'- gCUGGAa--GCugGUUUUuua---GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 42211 0.72 0.981613
Target:  5'- aGugUUUUGAUCugaaaggaGAGGGAUCGGCGGGg -3'
miRNA:   3'- gCugGAAGCUGG--------UUUUUUAGCCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.