Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15956 | 3' | -48.9 | NC_004065.1 | + | 142636 | 0.69 | 0.99811 |
Target: 5'- aGGCCgcUCGAUCAAc----CGGCGGAu -3' miRNA: 3'- gCUGGa-AGCUGGUUuuuuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 68265 | 0.69 | 0.996859 |
Target: 5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3' miRNA: 3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 168968 | 0.71 | 0.988583 |
Target: 5'- aCGGCCUcUCGGuguCCGucAGcgCGGCGGAc -3' miRNA: 3'- -GCUGGA-AGCU---GGUuuUUuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 119594 | 0.72 | 0.977114 |
Target: 5'- uGGCCUggaCGugCAGGAcgccggCGGCGGAg -3' miRNA: 3'- gCUGGAa--GCugGUUUUuua---GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 99447 | 0.68 | 0.999105 |
Target: 5'- aCGuCCUUCGGCCAGAugcccgGAGUCuuGGaccaGGAg -3' miRNA: 3'- -GCuGGAAGCUGGUUU------UUUAG--CCg---CCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 158231 | 0.68 | 0.99842 |
Target: 5'- aGAUCUcCGACCAGAAcGUCugcagaguGGCGGc -3' miRNA: 3'- gCUGGAaGCUGGUUUUuUAG--------CCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 68529 | 0.69 | 0.996313 |
Target: 5'- --cCCggaGGCCGAGGAGgcggCGGCGGAg -3' miRNA: 3'- gcuGGaagCUGGUUUUUUa---GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 145929 | 0.73 | 0.971853 |
Target: 5'- gGugUcgCGACCAGAAAcggaCGGCGGAg -3' miRNA: 3'- gCugGaaGCUGGUUUUUua--GCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 203138 | 0.68 | 0.99842 |
Target: 5'- gCGGCCUcUgGACCGGccgg-CGGUGGAa -3' miRNA: 3'- -GCUGGA-AgCUGGUUuuuuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 8526 | 0.75 | 0.937392 |
Target: 5'- uGGCUUUCGACCGGcucGAA-CGGUGGAu -3' miRNA: 3'- gCUGGAAGCUGGUUu--UUUaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 165372 | 0.69 | 0.996313 |
Target: 5'- aGAUC-UCGGCCAGca---CGGCGGAc -3' miRNA: 3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 166333 | 0.69 | 0.99811 |
Target: 5'- aCGGCCcgcuucUUCGugCGGGAGAgucUCGGCGaGGu -3' miRNA: 3'- -GCUGG------AAGCugGUUUUUU---AGCCGC-CU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 117063 | 0.7 | 0.994195 |
Target: 5'- gCGaACgUUCGGCCGcggcgcuGUCGGUGGAg -3' miRNA: 3'- -GC-UGgAAGCUGGUuuuu---UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 59754 | 0.71 | 0.989952 |
Target: 5'- cCGACCgcgUGGCCGAugguggCGGCGGc -3' miRNA: 3'- -GCUGGaa-GCUGGUUuuuua-GCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 218963 | 0.71 | 0.985414 |
Target: 5'- uCGACCcauaaACCAGAuAAUCGGCGGu -3' miRNA: 3'- -GCUGGaagc-UGGUUUuUUAGCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 69311 | 0.72 | 0.977114 |
Target: 5'- cCGACCgaCGACaCAGAGcaucguguucGUCGGCGGGa -3' miRNA: 3'- -GCUGGaaGCUG-GUUUUu---------UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 198350 | 0.68 | 0.999268 |
Target: 5'- aCGcACCUUCGcuugggaccGCCGGGugGUCGGCGu- -3' miRNA: 3'- -GC-UGGAAGC---------UGGUUUuuUAGCCGCcu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 172245 | 0.68 | 0.999105 |
Target: 5'- uCGACCgacUGACCAccGAGAGcgaCGGCGGc -3' miRNA: 3'- -GCUGGaa-GCUGGU--UUUUUa--GCCGCCu -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 146592 | 0.68 | 0.998913 |
Target: 5'- gGAUCggggUGGCCAucGGGGccGUCGGCGGGg -3' miRNA: 3'- gCUGGaa--GCUGGU--UUUU--UAGCCGCCU- -5' |
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15956 | 3' | -48.9 | NC_004065.1 | + | 168610 | 0.68 | 0.99842 |
Target: 5'- gGGCCUcuacUCGACCGucgucaugauGGAUCGcuGCGGAa -3' miRNA: 3'- gCUGGA----AGCUGGUuu--------UUUAGC--CGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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