miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15956 3' -48.9 NC_004065.1 + 114005 0.67 0.999776
Target:  5'- aGACCcgUCGGCagaGAGcugcccccgcggcgcAcGUCGGCGGAc -3'
miRNA:   3'- gCUGGa-AGCUGg--UUU---------------UuUAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 99447 0.68 0.999105
Target:  5'- aCGuCCUUCGGCCAGAugcccgGAGUCuuGGaccaGGAg -3'
miRNA:   3'- -GCuGGAAGCUGGUUU------UUUAG--CCg---CCU- -5'
15956 3' -48.9 NC_004065.1 + 68265 0.69 0.996859
Target:  5'- uGACCgggUCGGCCGAAGGAaccccacCGGCacggGGAa -3'
miRNA:   3'- gCUGGa--AGCUGGUUUUUUa------GCCG----CCU- -5'
15956 3' -48.9 NC_004065.1 + 90105 0.67 0.999754
Target:  5'- cCGuCCguucgUCGACCGAccccUCGGgGGAu -3'
miRNA:   3'- -GCuGGa----AGCUGGUUuuuuAGCCgCCU- -5'
15956 3' -48.9 NC_004065.1 + 165372 0.69 0.996313
Target:  5'- aGAUC-UCGGCCAGca---CGGCGGAc -3'
miRNA:   3'- gCUGGaAGCUGGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168485 0.66 0.999909
Target:  5'- uCGGCCUUCuACCGcGAcugcGAUCGccuGCGGGa -3'
miRNA:   3'- -GCUGGAAGcUGGUuUU----UUAGC---CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 81683 0.69 0.99811
Target:  5'- gGACCgggUGACCAAGGA--CGGCGa- -3'
miRNA:   3'- gCUGGaa-GCUGGUUUUUuaGCCGCcu -5'
15956 3' -48.9 NC_004065.1 + 80038 0.66 0.999909
Target:  5'- aGAUCg--GACUGGAGGAcUCGGUGGAg -3'
miRNA:   3'- gCUGGaagCUGGUUUUUU-AGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 120441 0.66 0.999909
Target:  5'- gCGGCCUgauaCGccGCCAGGAGAcaGGCGGc -3'
miRNA:   3'- -GCUGGAa---GC--UGGUUUUUUagCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 138401 0.66 0.999848
Target:  5'- uGACCgUCGACCGcGAcuUCuGCGGc -3'
miRNA:   3'- gCUGGaAGCUGGUuUUuuAGcCGCCu -5'
15956 3' -48.9 NC_004065.1 + 103072 0.66 0.999848
Target:  5'- gCGAUCUUCGGCacguacugCAAcAAGAUCGaGUGGGu -3'
miRNA:   3'- -GCUGGAAGCUG--------GUU-UUUUAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 83751 0.66 0.999806
Target:  5'- aGACgaa-GGCCAGGAAcUCGcGCGGAa -3'
miRNA:   3'- gCUGgaagCUGGUUUUUuAGC-CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 1901 0.66 0.999792
Target:  5'- aGACgUUCG-CCAAGAucuuggauacgcagGAgCGGCGGGc -3'
miRNA:   3'- gCUGgAAGCuGGUUUU--------------UUaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 151372 0.67 0.99973
Target:  5'- cCGGCCgcugcgcuggCGGCCGAucucuugggUGGCGGAg -3'
miRNA:   3'- -GCUGGaa--------GCUGGUUuuuua----GCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 153699 0.67 0.999691
Target:  5'- cCGACCUgauuuCCAAcacg-CGGCGGAu -3'
miRNA:   3'- -GCUGGAagcu-GGUUuuuuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 7317 0.67 0.999392
Target:  5'- uGACgaUCGAgCCGGugguaccGGAcgCGGCGGAg -3'
miRNA:   3'- gCUGgaAGCU-GGUU-------UUUuaGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 130052 0.68 0.999268
Target:  5'- aCGACCcgCGGCCcGAGcacgccgCGGCGGu -3'
miRNA:   3'- -GCUGGaaGCUGGuUUUuua----GCCGCCu -5'
15956 3' -48.9 NC_004065.1 + 146592 0.68 0.998913
Target:  5'- gGAUCggggUGGCCAucGGGGccGUCGGCGGGg -3'
miRNA:   3'- gCUGGaa--GCUGGU--UUUU--UAGCCGCCU- -5'
15956 3' -48.9 NC_004065.1 + 168610 0.68 0.99842
Target:  5'- gGGCCUcuacUCGACCGucgucaugauGGAUCGcuGCGGAa -3'
miRNA:   3'- gCUGGA----AGCUGGUuu--------UUUAGC--CGCCU- -5'
15956 3' -48.9 NC_004065.1 + 43516 0.68 0.99842
Target:  5'- gGACUcggCGGCCAGGAagagucGAUCGGCGu- -3'
miRNA:   3'- gCUGGaa-GCUGGUUUU------UUAGCCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.