miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 105537 0.66 0.920661
Target:  5'- -uGGAGAuccgcgcggcccuGGAcCCGGC-GCAGCGGCAc -3'
miRNA:   3'- ccCUUCU-------------UCUcGGCCGuCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 127475 0.66 0.920661
Target:  5'- cGGGGAGGuggucGGGCgCGGCGGgAGCguuguccAGCu -3'
miRNA:   3'- -CCCUUCUu----CUCG-GCCGUCgUCG-------UCGu -5'
15958 3' -57.2 NC_004065.1 + 55929 0.66 0.920661
Target:  5'- cGGcAGAAGucggagaAGCCGcacuuggugaGCAGguGCAGCAc -3'
miRNA:   3'- cCCuUCUUC-------UCGGC----------CGUCguCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 136350 0.66 0.919562
Target:  5'- cGGGAAGcugGGGAGCCGaGCcgagaagccgggaaGGguGCGGgGa -3'
miRNA:   3'- -CCCUUC---UUCUCGGC-CG--------------UCguCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 113750 0.66 0.919561
Target:  5'- cGGcGAGGAGGccgagggacAGCgCGGCGGCagacgaccgacucgGGCGGCu -3'
miRNA:   3'- -CC-CUUCUUC---------UCG-GCCGUCG--------------UCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 36062 0.66 0.916209
Target:  5'- aGGGAcacuccucacgaacAGAGGAG-CGGCGuuaguggaaacaaccGUGGCGGCAa -3'
miRNA:   3'- -CCCU--------------UCUUCUCgGCCGU---------------CGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62382 0.66 0.915643
Target:  5'- cGGggGuGGuGgCGGCGGgGGUGGCGg -3'
miRNA:   3'- cCCuuCuUCuCgGCCGUCgUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 131434 0.66 0.912195
Target:  5'- aGGGAGGAAggaagaaguagguacGAGuuGGCGGguGUuGUg -3'
miRNA:   3'- -CCCUUCUU---------------CUCggCCGUCguCGuCGu -5'
15958 3' -57.2 NC_004065.1 + 136168 0.66 0.90985
Target:  5'- cGGGGAGGGaAGCCGGaCAGggacCGGgAGCu -3'
miRNA:   3'- -CCCUUCUUcUCGGCC-GUC----GUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 34692 0.66 0.90985
Target:  5'- -aGAAGAAGaAGCUGGC-GCAGCGa-- -3'
miRNA:   3'- ccCUUCUUC-UCGGCCGuCGUCGUcgu -5'
15958 3' -57.2 NC_004065.1 + 136136 0.66 0.90985
Target:  5'- cGGGGAGGGaAGCCGGaCAGggacCGGgAGCu -3'
miRNA:   3'- -CCCUUCUUcUCGGCC-GUC----GUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 109126 0.66 0.90985
Target:  5'- cGGAGGuggcGGGGaCGGCGGguGaCGGCGg -3'
miRNA:   3'- cCCUUCu---UCUCgGCCGUCguC-GUCGU- -5'
15958 3' -57.2 NC_004065.1 + 45521 0.66 0.90985
Target:  5'- cGGAcGGucuacgccacccGGcGCCgcGGCGGCGGCGGCAg -3'
miRNA:   3'- cCCUuCU------------UCuCGG--CCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 136200 0.66 0.90985
Target:  5'- cGGGGAGGGaAGCCGGaCAGggacCGGgAGCu -3'
miRNA:   3'- -CCCUUCUUcUCGGCC-GUC----GUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 190086 0.66 0.90985
Target:  5'- aGGGAAGAAaaaGGaaGGUGGgGGCGGCu -3'
miRNA:   3'- -CCCUUCUUc--UCggCCGUCgUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 151091 0.66 0.903833
Target:  5'- cGGGccuGGuggcgcccGAGCuCGGCgacgacGGCAGCAGCGa -3'
miRNA:   3'- -CCCu--UCuu------CUCG-GCCG------UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 225263 0.66 0.903833
Target:  5'- aGGAGGAcagAGaAGCUGGCcGCAcGUAGCc -3'
miRNA:   3'- cCCUUCU---UC-UCGGCCGuCGU-CGUCGu -5'
15958 3' -57.2 NC_004065.1 + 83231 0.66 0.903833
Target:  5'- cGGGAGGAGcauacuGCaCGGCGGUcugGGUGGCGu -3'
miRNA:   3'- -CCCUUCUUcu----CG-GCCGUCG---UCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 89677 0.66 0.903833
Target:  5'- -uGGAGAcGAGCUcGCAGCAG-AGCAa -3'
miRNA:   3'- ccCUUCUuCUCGGcCGUCGUCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 129458 0.66 0.903833
Target:  5'- cGGGcGGAAaaaAGCCGcaagcgcacCAGCGGCGGCAg -3'
miRNA:   3'- -CCCuUCUUc--UCGGCc--------GUCGUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.