miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 129458 0.66 0.903833
Target:  5'- cGGGcGGAAaaaAGCCGcaagcgcacCAGCGGCGGCAg -3'
miRNA:   3'- -CCCuUCUUc--UCGGCc--------GUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 127475 0.66 0.920661
Target:  5'- cGGGGAGGuggucGGGCgCGGCGGgAGCguuguccAGCu -3'
miRNA:   3'- -CCCUUCUu----CUCG-GCCGUCgUCG-------UCGu -5'
15958 3' -57.2 NC_004065.1 + 49886 0.66 0.897591
Target:  5'- gGGGAGGAAGAaCagaaCAGCAGCAGgAg -3'
miRNA:   3'- -CCCUUCUUCUcGgcc-GUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 119618 0.66 0.891128
Target:  5'- cGGcGGAGGAGAcGCCGuCGGCcGUGGCGu -3'
miRNA:   3'- -CC-CUUCUUCU-CGGCcGUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 107975 0.66 0.891128
Target:  5'- aGGGuu---GAGaCCGGCAGCGGaCGGaCAg -3'
miRNA:   3'- -CCCuucuuCUC-GGCCGUCGUC-GUC-GU- -5'
15958 3' -57.2 NC_004065.1 + 136136 0.66 0.90985
Target:  5'- cGGGGAGGGaAGCCGGaCAGggacCGGgAGCu -3'
miRNA:   3'- -CCCUUCUUcUCGGCC-GUC----GUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 34692 0.66 0.90985
Target:  5'- -aGAAGAAGaAGCUGGC-GCAGCGa-- -3'
miRNA:   3'- ccCUUCUUC-UCGGCCGuCGUCGUcgu -5'
15958 3' -57.2 NC_004065.1 + 163485 0.66 0.897591
Target:  5'- -cGucGgcGGcGCCGGUGGCGGCGGCu -3'
miRNA:   3'- ccCuuCuuCU-CGGCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 84379 0.66 0.89309
Target:  5'- aGGGAAGAAGAcacgaucGCCGacguguaauuagcgaGCAGgUAGguGCGa -3'
miRNA:   3'- -CCCUUCUUCU-------CGGC---------------CGUC-GUCguCGU- -5'
15958 3' -57.2 NC_004065.1 + 136168 0.66 0.90985
Target:  5'- cGGGGAGGGaAGCCGGaCAGggacCGGgAGCu -3'
miRNA:   3'- -CCCUUCUUcUCGGCC-GUC----GUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 36062 0.66 0.916209
Target:  5'- aGGGAcacuccucacgaacAGAGGAG-CGGCGuuaguggaaacaaccGUGGCGGCAa -3'
miRNA:   3'- -CCCU--------------UCUUCUCgGCCGU---------------CGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 136200 0.66 0.90985
Target:  5'- cGGGGAGGGaAGCCGGaCAGggacCGGgAGCu -3'
miRNA:   3'- -CCCUUCUUcUCGGCC-GUC----GUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 7303 0.67 0.870448
Target:  5'- gGGcGAGGAGcuccugacgaucGAGCCGGUGGUAccggacGCGGCGg -3'
miRNA:   3'- -CC-CUUCUU------------CUCGGCCGUCGU------CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 102007 0.67 0.884447
Target:  5'- aGGAAGAGGucguAGuuGGC-GCGGCGGg- -3'
miRNA:   3'- cCCUUCUUC----UCggCCGuCGUCGUCgu -5'
15958 3' -57.2 NC_004065.1 + 140140 0.67 0.877552
Target:  5'- cGGGAGGGAcGAGaucagCGGgAGCAcGCAGUc -3'
miRNA:   3'- -CCCUUCUU-CUCg----GCCgUCGU-CGUCGu -5'
15958 3' -57.2 NC_004065.1 + 18929 0.67 0.877552
Target:  5'- --cGAGgcGAGaCGGCgGGCAGCAGCu -3'
miRNA:   3'- cccUUCuuCUCgGCCG-UCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 112843 0.67 0.863139
Target:  5'- -aGAAGAAGAuguuGCCGuCGGaCAGCAGCu -3'
miRNA:   3'- ccCUUCUUCU----CGGCcGUC-GUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 153119 0.67 0.877552
Target:  5'- uGGAGGGGuuuuGGUCGGguGCGcguGCAGCAa -3'
miRNA:   3'- cCCUUCUUc---UCGGCCguCGU---CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 100635 0.67 0.85563
Target:  5'- ------cAGcGUCGGCGGCAGCGGCGa -3'
miRNA:   3'- cccuucuUCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 148168 0.67 0.877552
Target:  5'- uGGGAGGAGuAGUgauggugguauCGGUAGUAGUAGUg -3'
miRNA:   3'- -CCCUUCUUcUCG-----------GCCGUCGUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.