miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 27368 1.1 0.002387
Target:  5'- gGGGAAGAAGAGCCGGCAGCAGCAGCAg -3'
miRNA:   3'- -CCCUUCUUCUCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 143323 0.89 0.062377
Target:  5'- gGGGAAGAGGGGgCGGgGGCGGCGGCAg -3'
miRNA:   3'- -CCCUUCUUCUCgGCCgUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 156330 0.88 0.076956
Target:  5'- cGGAGGAGGAGgaagCGGCGGCAGCAGCAa -3'
miRNA:   3'- cCCUUCUUCUCg---GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 71656 0.84 0.125691
Target:  5'- cGGGAcGAAGGGCCuccucaGCAGCAGCAGCGg -3'
miRNA:   3'- -CCCUuCUUCUCGGc-----CGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 156284 0.83 0.157694
Target:  5'- cGGGAGGcGGGAGUagCGGCGGCAGCAGUg -3'
miRNA:   3'- -CCCUUC-UUCUCG--GCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 29963 0.81 0.196884
Target:  5'- cGGGGAccGGuGCUGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCUUcuUCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 93338 0.81 0.196884
Target:  5'- cGGGAAGgcGAGCCGaucGCAGCAGgCGGUAa -3'
miRNA:   3'- -CCCUUCuuCUCGGC---CGUCGUC-GUCGU- -5'
15958 3' -57.2 NC_004065.1 + 223885 0.81 0.21173
Target:  5'- -cGGAGAugacgaguaGGAGCUGGCGGCGGCGGCGu -3'
miRNA:   3'- ccCUUCU---------UCUCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 136232 0.8 0.227528
Target:  5'- cGGGGAGAGGAGCCGGaCAGgaacCGGgAGCGg -3'
miRNA:   3'- -CCCUUCUUCUCGGCC-GUC----GUCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 101517 0.8 0.236355
Target:  5'- cGGAGGcaucgucgucgguGGAGgCGGCAGCAGCAGCGg -3'
miRNA:   3'- cCCUUCu------------UCUCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 128404 0.79 0.274558
Target:  5'- uGGggGccGAG-CGGCAGCGGCGGCGg -3'
miRNA:   3'- cCCuuCuuCUCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62068 0.79 0.280955
Target:  5'- aGGuGAGGAuucggauucaGGGGCgaCGGCAGCGGCAGCGg -3'
miRNA:   3'- -CC-CUUCU----------UCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 128725 0.79 0.283547
Target:  5'- aGGGAGAGGcGGCUGGCcccgaggcagccgucGGCAGCGGCAg -3'
miRNA:   3'- cCCUUCUUC-UCGGCCG---------------UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 132924 0.78 0.314718
Target:  5'- aGGAGGAGGAGaCCGucgcggagaCAGCAGCAGCAc -3'
miRNA:   3'- cCCUUCUUCUC-GGCc--------GUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 110219 0.78 0.314718
Target:  5'- aGGGAAGAGGGcuucGCCGGCGGCuGCGuCAa -3'
miRNA:   3'- -CCCUUCUUCU----CGGCCGUCGuCGUcGU- -5'
15958 3' -57.2 NC_004065.1 + 223202 0.78 0.321828
Target:  5'- gGGGAuacagaacGGGAGucGUCGGCGGUAGCGGCGa -3'
miRNA:   3'- -CCCU--------UCUUCu-CGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 166137 0.77 0.329058
Target:  5'- cGGcaGAGAcgucGGcGCCGGCGGCAGCGGCGc -3'
miRNA:   3'- cCC--UUCU----UCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 67660 0.77 0.343874
Target:  5'- cGGuGAugucGggGAGCggCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CC-CUu---CuuCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 80784 0.77 0.343874
Target:  5'- aGGGAgcAGgcGAcGgCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCU--UCuuCU-CgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 172089 0.77 0.35146
Target:  5'- uGGGuGGAGGGGCCGGgGGaGGCGGCu -3'
miRNA:   3'- -CCCuUCUUCUCGGCCgUCgUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.