miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 75773 0.77 0.35684
Target:  5'- gGGGAGGcGGAGgCGGCggucggcgagggggAGCGGCGGCGa -3'
miRNA:   3'- -CCCUUCuUCUCgGCCG--------------UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 130118 0.76 0.391143
Target:  5'- -cGAAGAAGAcGCCGGCAGCAucaaCGGCGa -3'
miRNA:   3'- ccCUUCUUCU-CGGCCGUCGUc---GUCGU- -5'
15958 3' -57.2 NC_004065.1 + 189426 0.76 0.416315
Target:  5'- cGGGAAGGuAGcAGuuGGUaaacGGCAGCGGCAu -3'
miRNA:   3'- -CCCUUCU-UC-UCggCCG----UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 184798 0.76 0.419746
Target:  5'- cGGAGGAGGAcggugacgcaacgguGgCGGUGGCGGCAGCGg -3'
miRNA:   3'- cCCUUCUUCU---------------CgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 65323 0.75 0.460385
Target:  5'- uGGGAccGGcGGcGgCGGCGGCAGCAGCu -3'
miRNA:   3'- -CCCU--UCuUCuCgGCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 163622 0.75 0.460385
Target:  5'- cGGGuagcuccGGAucGAGCggCGGCGGCGGCGGCAg -3'
miRNA:   3'- -CCCu------UCUu-CUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 152281 0.74 0.496412
Target:  5'- aGGucGAGGAGCucgcccaguccugCGGCGGCGGCGGUg -3'
miRNA:   3'- cCCuuCUUCUCG-------------GCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 83268 0.74 0.497353
Target:  5'- gGGGAAGAAGuacucGaCCGGCcucGCGGCGGCc -3'
miRNA:   3'- -CCCUUCUUCu----C-GGCCGu--CGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 174869 0.74 0.497353
Target:  5'- cGGGGAGAagAGGGCCGGgAaCGGCGGUu -3'
miRNA:   3'- -CCCUUCU--UCUCGGCCgUcGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 205599 0.73 0.525931
Target:  5'- -cGAGGucuacGUCGGCAGCAGCGGCAa -3'
miRNA:   3'- ccCUUCuucu-CGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 77001 0.73 0.525931
Target:  5'- uGGAGGAGGAGgaGGCGGCGuGCuGCGa -3'
miRNA:   3'- cCCUUCUUCUCggCCGUCGU-CGuCGU- -5'
15958 3' -57.2 NC_004065.1 + 109228 0.73 0.535596
Target:  5'- cGGcGAcGGGAGAcGgCGGCGGUAGCGGCGu -3'
miRNA:   3'- -CC-CU-UCUUCU-CgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 154151 0.73 0.535596
Target:  5'- cGGGcGGuGGcGgCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCuUCuUCuCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 72501 0.73 0.545322
Target:  5'- cGGGGAGAAGGuggaaCGGCAGguGguGCu -3'
miRNA:   3'- -CCCUUCUUCUcg---GCCGUCguCguCGu -5'
15958 3' -57.2 NC_004065.1 + 139864 0.73 0.545322
Target:  5'- cGGAGGcggcGGAGCCGGCGGCAGgaCGGaCGa -3'
miRNA:   3'- cCCUUCu---UCUCGGCCGUCGUC--GUC-GU- -5'
15958 3' -57.2 NC_004065.1 + 116309 0.73 0.564938
Target:  5'- -cGAGGugucGGcGUCGGCGGCGGCAGCGg -3'
miRNA:   3'- ccCUUCu---UCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 171944 0.73 0.574817
Target:  5'- aGGGucucgcgcAAGgcGGGCggUGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCC--------UUCuuCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 75646 0.73 0.574817
Target:  5'- gGGGAGGAGGuggaaguggaGGUCGGCgaGGCGGCcGCGg -3'
miRNA:   3'- -CCCUUCUUC----------UCGGCCG--UCGUCGuCGU- -5'
15958 3' -57.2 NC_004065.1 + 140532 0.72 0.583741
Target:  5'- aGGGAuGAGGAGgaGGCGGCgucggcuuccucuAGCGGCGg -3'
miRNA:   3'- -CCCUuCUUCUCggCCGUCG-------------UCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 118714 0.72 0.604661
Target:  5'- gGGGAGGggGAGCgucgugucCGGCAggucucGCAGuCGGCu -3'
miRNA:   3'- -CCCUUCuuCUCG--------GCCGU------CGUC-GUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.