miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 26932 0.66 0.901362
Target:  5'- -cGAAGAAGGcucaaggaccgcuCCGGCGGCcGCGGCGg -3'
miRNA:   3'- ccCUUCUUCUc------------GGCCGUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 56719 0.66 0.897591
Target:  5'- ---cAGcGGcGgCGGCGGCGGCAGCAg -3'
miRNA:   3'- cccuUCuUCuCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 30126 0.66 0.897591
Target:  5'- cGGccuGGGGAGGGCgGGUGGCGG-AGCGa -3'
miRNA:   3'- cCC---UUCUUCUCGgCCGUCGUCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 24449 0.66 0.897591
Target:  5'- cGGGA-----GGCUGGCGGUAGUggGGCAg -3'
miRNA:   3'- -CCCUucuucUCGGCCGUCGUCG--UCGU- -5'
15958 3' -57.2 NC_004065.1 + 49886 0.66 0.897591
Target:  5'- gGGGAGGAAGAaCagaaCAGCAGCAGgAg -3'
miRNA:   3'- -CCCUUCUUCUcGgcc-GUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 163485 0.66 0.897591
Target:  5'- -cGucGgcGGcGCCGGUGGCGGCGGCu -3'
miRNA:   3'- ccCuuCuuCU-CGGCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 84379 0.66 0.89309
Target:  5'- aGGGAAGAAGAcacgaucGCCGacguguaauuagcgaGCAGgUAGguGCGa -3'
miRNA:   3'- -CCCUUCUUCU-------CGGC---------------CGUC-GUCguCGU- -5'
15958 3' -57.2 NC_004065.1 + 145716 0.66 0.891128
Target:  5'- aGGAGGAGaGGUCGGUggaggaGGCGGgAGCGg -3'
miRNA:   3'- cCCUUCUUcUCGGCCG------UCGUCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 138448 0.66 0.891128
Target:  5'- aGGGGuc-GGGGCgGGCgAGCAGCAaCAa -3'
miRNA:   3'- -CCCUucuUCUCGgCCG-UCGUCGUcGU- -5'
15958 3' -57.2 NC_004065.1 + 19552 0.66 0.891128
Target:  5'- aGGAuGAacugcgugGGuGUCGGUGGCGGCGGUAg -3'
miRNA:   3'- cCCUuCU--------UCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 119618 0.66 0.891128
Target:  5'- cGGcGGAGGAGAcGCCGuCGGCcGUGGCGu -3'
miRNA:   3'- -CC-CUUCUUCU-CGGCcGUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 107975 0.66 0.891128
Target:  5'- aGGGuu---GAGaCCGGCAGCGGaCGGaCAg -3'
miRNA:   3'- -CCCuucuuCUC-GGCCGUCGUC-GUC-GU- -5'
15958 3' -57.2 NC_004065.1 + 102007 0.67 0.884447
Target:  5'- aGGAAGAGGucguAGuuGGC-GCGGCGGg- -3'
miRNA:   3'- cCCUUCUUC----UCggCCGuCGUCGUCgu -5'
15958 3' -57.2 NC_004065.1 + 200548 0.67 0.884447
Target:  5'- uGGcGAGGgcGA-CgGGCGGCAGCGGgAa -3'
miRNA:   3'- -CC-CUUCuuCUcGgCCGUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 140140 0.67 0.877552
Target:  5'- cGGGAGGGAcGAGaucagCGGgAGCAcGCAGUc -3'
miRNA:   3'- -CCCUUCUU-CUCg----GCCgUCGU-CGUCGu -5'
15958 3' -57.2 NC_004065.1 + 28968 0.67 0.877552
Target:  5'- cGGGGcgcuacgacacGGAucAGucuCCGGCGGCGGUGGCGa -3'
miRNA:   3'- -CCCU-----------UCU--UCuc-GGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 18929 0.67 0.877552
Target:  5'- --cGAGgcGAGaCGGCgGGCAGCAGCu -3'
miRNA:   3'- cccUUCuuCUCgGCCG-UCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 148168 0.67 0.877552
Target:  5'- uGGGAGGAGuAGUgauggugguauCGGUAGUAGUAGUg -3'
miRNA:   3'- -CCCUUCUUcUCG-----------GCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 153119 0.67 0.877552
Target:  5'- uGGAGGGGuuuuGGUCGGguGCGcguGCAGCAa -3'
miRNA:   3'- cCCUUCUUc---UCGGCCguCGU---CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 211916 0.67 0.876851
Target:  5'- cGGAGGuucuuccgcgacaGAGAuGCCGGCcacgaGGCuGCGGCGg -3'
miRNA:   3'- cCCUUC-------------UUCU-CGGCCG-----UCGuCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.