miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 7303 0.67 0.870448
Target:  5'- gGGcGAGGAGcuccugacgaucGAGCCGGUGGUAccggacGCGGCGg -3'
miRNA:   3'- -CC-CUUCUU------------CUCGGCCGUCGU------CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 132408 0.67 0.870448
Target:  5'- aGGGcGGcucu-UCGGCAGCGGCGGCGg -3'
miRNA:   3'- -CCCuUCuucucGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 29432 0.67 0.863139
Target:  5'- aGGGAGAAGAcgguGCCGGgGuaGGUGGCGg -3'
miRNA:   3'- cCCUUCUUCU----CGGCCgUcgUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 49550 0.67 0.863139
Target:  5'- uGGGcAGggGAucGCCGGCcacGUAGCcguGCAu -3'
miRNA:   3'- -CCCuUCuuCU--CGGCCGu--CGUCGu--CGU- -5'
15958 3' -57.2 NC_004065.1 + 112843 0.67 0.863139
Target:  5'- -aGAAGAAGAuguuGCCGuCGGaCAGCAGCu -3'
miRNA:   3'- ccCUUCUUCU----CGGCcGUC-GUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 30140 0.67 0.863139
Target:  5'- gGGGAGGgcGA-CCGGCcGCucgugcuguGCGGCAc -3'
miRNA:   3'- -CCCUUCuuCUcGGCCGuCGu--------CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 50948 0.67 0.863139
Target:  5'- aGGAGGAGGAGUaucaGGaggAGCAGgAGCc -3'
miRNA:   3'- cCCUUCUUCUCGg---CCg--UCGUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 87602 0.67 0.85563
Target:  5'- ----uGAGGAGCCGGCGcGCcGGCAGgCGa -3'
miRNA:   3'- cccuuCUUCUCGGCCGU-CG-UCGUC-GU- -5'
15958 3' -57.2 NC_004065.1 + 49413 0.67 0.85563
Target:  5'- uGGAugccAGGucucAGCUGGCAGUauGGCAGCAg -3'
miRNA:   3'- cCCU----UCUuc--UCGGCCGUCG--UCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 168548 0.67 0.85563
Target:  5'- cGGcGGuGGuGGCagCGGCGGCGGCGGCGa -3'
miRNA:   3'- cCCuUCuUC-UCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 100635 0.67 0.85563
Target:  5'- ------cAGcGUCGGCGGCAGCGGCGa -3'
miRNA:   3'- cccuucuUCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 164555 0.67 0.85563
Target:  5'- ----uGucGAGCCGGCGGCGGC-GCc -3'
miRNA:   3'- cccuuCuuCUCGGCCGUCGUCGuCGu -5'
15958 3' -57.2 NC_004065.1 + 191160 0.67 0.85563
Target:  5'- -uGAAGAAGAGuCUGGCgaugGGCGucccGCGGCAg -3'
miRNA:   3'- ccCUUCUUCUC-GGCCG----UCGU----CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 89834 0.68 0.847928
Target:  5'- gGGGGAGAAG-GCCguGGC-GUAGgGGCu -3'
miRNA:   3'- -CCCUUCUUCuCGG--CCGuCGUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 114806 0.68 0.847928
Target:  5'- cGGGggGcAAGAGaacgCGGCAGagaGGgAGCGc -3'
miRNA:   3'- -CCCuuC-UUCUCg---GCCGUCg--UCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 133052 0.68 0.847928
Target:  5'- -cGAcGGAcGGCCGGCGcagcaggcGCGGCAGCAg -3'
miRNA:   3'- ccCUuCUUcUCGGCCGU--------CGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 8749 0.68 0.847928
Target:  5'- cGGAGGccGuGgUGGCGGCGGCAGgGu -3'
miRNA:   3'- cCCUUCuuCuCgGCCGUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 184856 0.68 0.840039
Target:  5'- aGGGAucgAGucGAGCgGGCGGCGGgAcGCc -3'
miRNA:   3'- -CCCU---UCuuCUCGgCCGUCGUCgU-CGu -5'
15958 3' -57.2 NC_004065.1 + 69017 0.68 0.831968
Target:  5'- uGGAGGAcauGAuCaCGGaUAGCAGCAGCAg -3'
miRNA:   3'- cCCUUCUu--CUcG-GCC-GUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 209554 0.68 0.831968
Target:  5'- cGGGAcugaaGGAGGcccGGCCGGCuGCuGGCgGGCGu -3'
miRNA:   3'- -CCCU-----UCUUC---UCGGCCGuCG-UCG-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.