miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 7303 0.67 0.870448
Target:  5'- gGGcGAGGAGcuccugacgaucGAGCCGGUGGUAccggacGCGGCGg -3'
miRNA:   3'- -CC-CUUCUU------------CUCGGCCGUCGU------CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 8749 0.68 0.847928
Target:  5'- cGGAGGccGuGgUGGCGGCGGCAGgGu -3'
miRNA:   3'- cCCUUCuuCuCgGCCGUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 17284 0.7 0.742963
Target:  5'- cGGAGGuGGuGUCGGguGCGGCGGa- -3'
miRNA:   3'- cCCUUCuUCuCGGCCguCGUCGUCgu -5'
15958 3' -57.2 NC_004065.1 + 18929 0.67 0.877552
Target:  5'- --cGAGgcGAGaCGGCgGGCAGCAGCu -3'
miRNA:   3'- cccUUCuuCUCgGCCG-UCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 19552 0.66 0.891128
Target:  5'- aGGAuGAacugcgugGGuGUCGGUGGCGGCGGUAg -3'
miRNA:   3'- cCCUuCU--------UCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 22376 0.71 0.654695
Target:  5'- --aGAGAgGGAGCCGGCcGCGuGCGGCAu -3'
miRNA:   3'- cccUUCU-UCUCGGCCGuCGU-CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 23551 0.69 0.789154
Target:  5'- cGGGAgaAGAAGAuGCgGGCGGgCGGgcaGGCAg -3'
miRNA:   3'- -CCCU--UCUUCU-CGgCCGUC-GUCg--UCGU- -5'
15958 3' -57.2 NC_004065.1 + 24050 0.71 0.674641
Target:  5'- cGGuGAGGAugguGAG-CGGCGGCAGCAugaGCGg -3'
miRNA:   3'- -CC-CUUCUu---CUCgGCCGUCGUCGU---CGU- -5'
15958 3' -57.2 NC_004065.1 + 24449 0.66 0.897591
Target:  5'- cGGGA-----GGCUGGCGGUAGUggGGCAg -3'
miRNA:   3'- -CCCUucuucUCGGCCGUCGUCG--UCGU- -5'
15958 3' -57.2 NC_004065.1 + 26932 0.66 0.901362
Target:  5'- -cGAAGAAGGcucaaggaccgcuCCGGCGGCcGCGGCGg -3'
miRNA:   3'- ccCUUCUUCUc------------GGCCGUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 27273 0.7 0.742963
Target:  5'- aGGAcGAAGAGaCCGGCGGC-GCcGCc -3'
miRNA:   3'- cCCUuCUUCUC-GGCCGUCGuCGuCGu -5'
15958 3' -57.2 NC_004065.1 + 27368 1.1 0.002387
Target:  5'- gGGGAAGAAGAGCCGGCAGCAGCAGCAg -3'
miRNA:   3'- -CCCUUCUUCUCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 28968 0.67 0.877552
Target:  5'- cGGGGcgcuacgacacGGAucAGucuCCGGCGGCGGUGGCGa -3'
miRNA:   3'- -CCCU-----------UCU--UCuc-GGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 29432 0.67 0.863139
Target:  5'- aGGGAGAAGAcgguGCCGGgGuaGGUGGCGg -3'
miRNA:   3'- cCCUUCUUCU----CGGCCgUcgUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 29963 0.81 0.196884
Target:  5'- cGGGGAccGGuGCUGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCUUcuUCuCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 30126 0.66 0.897591
Target:  5'- cGGccuGGGGAGGGCgGGUGGCGG-AGCGa -3'
miRNA:   3'- cCC---UUCUUCUCGgCCGUCGUCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 30140 0.67 0.863139
Target:  5'- gGGGAGGgcGA-CCGGCcGCucgugcuguGCGGCAc -3'
miRNA:   3'- -CCCUUCuuCUcGGCCGuCGu--------CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 34692 0.66 0.90985
Target:  5'- -aGAAGAAGaAGCUGGC-GCAGCGa-- -3'
miRNA:   3'- ccCUUCUUC-UCGGCCGuCGUCGUcgu -5'
15958 3' -57.2 NC_004065.1 + 35614 0.7 0.742963
Target:  5'- cGGGAuccac-GgCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CCCUucuucuCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 36062 0.66 0.916209
Target:  5'- aGGGAcacuccucacgaacAGAGGAG-CGGCGuuaguggaaacaaccGUGGCGGCAa -3'
miRNA:   3'- -CCCU--------------UCUUCUCgGCCGU---------------CGUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.