miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 39294 0.69 0.78826
Target:  5'- cGGcGAAuGggGAGCCGGCgaacuguugggagAGUGGUGGCu -3'
miRNA:   3'- -CC-CUU-CuuCUCGGCCG-------------UCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 43769 0.69 0.761778
Target:  5'- aGGcGAAGGuaccuguucgGGGGCCaGGcCAGgGGCAGCAu -3'
miRNA:   3'- -CC-CUUCU----------UCUCGG-CC-GUCgUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 45521 0.66 0.90985
Target:  5'- cGGAcGGucuacgccacccGGcGCCgcGGCGGCGGCGGCAg -3'
miRNA:   3'- cCCUuCU------------UCuCGG--CCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 49413 0.67 0.85563
Target:  5'- uGGAugccAGGucucAGCUGGCAGUauGGCAGCAg -3'
miRNA:   3'- cCCU----UCUuc--UCGGCCGUCG--UCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 49550 0.67 0.863139
Target:  5'- uGGGcAGggGAucGCCGGCcacGUAGCcguGCAu -3'
miRNA:   3'- -CCCuUCuuCU--CGGCCGu--CGUCGu--CGU- -5'
15958 3' -57.2 NC_004065.1 + 49886 0.66 0.897591
Target:  5'- gGGGAGGAAGAaCagaaCAGCAGCAGgAg -3'
miRNA:   3'- -CCCUUCUUCUcGgcc-GUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 50948 0.67 0.863139
Target:  5'- aGGAGGAGGAGUaucaGGaggAGCAGgAGCc -3'
miRNA:   3'- cCCUUCUUCUCGg---CCg--UCGUCgUCGu -5'
15958 3' -57.2 NC_004065.1 + 55929 0.66 0.920661
Target:  5'- cGGcAGAAGucggagaAGCCGcacuuggugaGCAGguGCAGCAc -3'
miRNA:   3'- cCCuUCUUC-------UCGGC----------CGUCguCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 56719 0.66 0.897591
Target:  5'- ---cAGcGGcGgCGGCGGCGGCAGCAg -3'
miRNA:   3'- cccuUCuUCuCgGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 59546 0.69 0.79802
Target:  5'- -aGAcGAAGAGCuCGccgagcggucuGCGGCGGCAGCGa -3'
miRNA:   3'- ccCUuCUUCUCG-GC-----------CGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 61796 0.7 0.694454
Target:  5'- ----cGAGGAuGCCguGGCAGUAGCAGCGc -3'
miRNA:   3'- cccuuCUUCU-CGG--CCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62068 0.79 0.280955
Target:  5'- aGGuGAGGAuucggauucaGGGGCgaCGGCAGCGGCAGCGg -3'
miRNA:   3'- -CC-CUUCU----------UCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62382 0.66 0.915643
Target:  5'- cGGggGuGGuGgCGGCGGgGGUGGCGg -3'
miRNA:   3'- cCCuuCuUCuCgGCCGUCgUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62478 0.7 0.733412
Target:  5'- cGGcAGGAGcGGCC-GCGGCGGUAGCGu -3'
miRNA:   3'- cCCuUCUUC-UCGGcCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 62619 0.7 0.694454
Target:  5'- cGGcGGcAGcAGCC-GCGGCAGCAGCAu -3'
miRNA:   3'- cCCuUCuUC-UCGGcCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 65323 0.75 0.460385
Target:  5'- uGGGAccGGcGGcGgCGGCGGCAGCAGCu -3'
miRNA:   3'- -CCCU--UCuUCuCgGCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 67660 0.77 0.343874
Target:  5'- cGGuGAugucGggGAGCggCGGCGGCGGCGGCGg -3'
miRNA:   3'- -CC-CUu---CuuCUCG--GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 67807 0.69 0.789154
Target:  5'- cGGGcAAGAAGAGaCgGGCGccggacgugccGCcGCAGCAg -3'
miRNA:   3'- -CCC-UUCUUCUC-GgCCGU-----------CGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 68088 0.69 0.79802
Target:  5'- uGGAcaagacgacGGAcGAGUCGGCGGU-GCAGCGg -3'
miRNA:   3'- cCCU---------UCUuCUCGGCCGUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 68531 0.7 0.733412
Target:  5'- cGGAGGccGAGgaGGCGGCGGCGGa- -3'
miRNA:   3'- cCCUUCuuCUCggCCGUCGUCGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.