miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15958 3' -57.2 NC_004065.1 + 229654 0.69 0.752422
Target:  5'- --------cGGCCGGCGGCAGUGGCAg -3'
miRNA:   3'- cccuucuucUCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 225263 0.66 0.903833
Target:  5'- aGGAGGAcagAGaAGCUGGCcGCAcGUAGCc -3'
miRNA:   3'- cCCUUCU---UC-UCGGCCGuCGU-CGUCGu -5'
15958 3' -57.2 NC_004065.1 + 223885 0.81 0.21173
Target:  5'- -cGGAGAugacgaguaGGAGCUGGCGGCGGCGGCGu -3'
miRNA:   3'- ccCUUCU---------UCUCGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 223202 0.78 0.321828
Target:  5'- gGGGAuacagaacGGGAGucGUCGGCGGUAGCGGCGa -3'
miRNA:   3'- -CCCU--------UCUUCu-CGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 211916 0.67 0.876851
Target:  5'- cGGAGGuucuuccgcgacaGAGAuGCCGGCcacgaGGCuGCGGCGg -3'
miRNA:   3'- cCCUUC-------------UUCU-CGGCCG-----UCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 211811 0.69 0.780153
Target:  5'- cGGGAGGAAGAGCCGacuugucgaCAGUcGCgAGCc -3'
miRNA:   3'- -CCCUUCUUCUCGGCc--------GUCGuCG-UCGu -5'
15958 3' -57.2 NC_004065.1 + 209554 0.68 0.831968
Target:  5'- cGGGAcugaaGGAGGcccGGCCGGCuGCuGGCgGGCGu -3'
miRNA:   3'- -CCCU-----UCUUC---UCGGCCGuCG-UCG-UCGU- -5'
15958 3' -57.2 NC_004065.1 + 205599 0.73 0.525931
Target:  5'- -cGAGGucuacGUCGGCAGCAGCGGCAa -3'
miRNA:   3'- ccCUUCuucu-CGGCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 205525 0.7 0.723777
Target:  5'- gGGGccGGcgcucAGGGCCGGCGGCGGU-GCc -3'
miRNA:   3'- -CCCuuCU-----UCUCGGCCGUCGUCGuCGu -5'
15958 3' -57.2 NC_004065.1 + 202243 0.68 0.815312
Target:  5'- uGGGGcAGGAG-GCCcuccagacGGCGGC-GCAGCGu -3'
miRNA:   3'- -CCCU-UCUUCuCGG--------CCGUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 201309 0.69 0.79802
Target:  5'- gGGGAGGAGGAGaggaugaUGGUGGCgGGguGCu -3'
miRNA:   3'- -CCCUUCUUCUCg------GCCGUCG-UCguCGu -5'
15958 3' -57.2 NC_004065.1 + 200548 0.67 0.884447
Target:  5'- uGGcGAGGgcGA-CgGGCGGCAGCGGgAa -3'
miRNA:   3'- -CC-CUUCuuCUcGgCCGUCGUCGUCgU- -5'
15958 3' -57.2 NC_004065.1 + 200497 0.71 0.664681
Target:  5'- cGGGAGAuAGAGaCGGaCGGCuGCAGCGc -3'
miRNA:   3'- cCCUUCU-UCUCgGCC-GUCGuCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 200259 0.69 0.761778
Target:  5'- cGGGGAGAucAGUCGGCucucGCAGgAGUAc -3'
miRNA:   3'- -CCCUUCUucUCGGCCGu---CGUCgUCGU- -5'
15958 3' -57.2 NC_004065.1 + 193622 0.71 0.674641
Target:  5'- -uGAAGAGGAugaaaGCgaaagUGGCGGCGGCAGCGa -3'
miRNA:   3'- ccCUUCUUCU-----CG-----GCCGUCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 191160 0.67 0.85563
Target:  5'- -uGAAGAAGAGuCUGGCgaugGGCGucccGCGGCAg -3'
miRNA:   3'- ccCUUCUUCUC-GGCCG----UCGU----CGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 190086 0.66 0.90985
Target:  5'- aGGGAAGAAaaaGGaaGGUGGgGGCGGCu -3'
miRNA:   3'- -CCCUUCUUc--UCggCCGUCgUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 189748 0.7 0.714067
Target:  5'- gGGGGAGAcgauGAGgauugCGGUGGCGGCAGUg -3'
miRNA:   3'- -CCCUUCUu---CUCg----GCCGUCGUCGUCGu -5'
15958 3' -57.2 NC_004065.1 + 189426 0.76 0.416315
Target:  5'- cGGGAAGGuAGcAGuuGGUaaacGGCAGCGGCAu -3'
miRNA:   3'- -CCCUUCU-UC-UCggCCG----UCGUCGUCGU- -5'
15958 3' -57.2 NC_004065.1 + 184856 0.68 0.840039
Target:  5'- aGGGAucgAGucGAGCgGGCGGCGGgAcGCc -3'
miRNA:   3'- -CCCU---UCuuCUCGgCCGUCGUCgU-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.